miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21351 3' -55.9 NC_004778.3 + 2075 0.7 0.642059
Target:  5'- -uUGGACG-GCGUCgacaaAGCGCCGGCg-- -3'
miRNA:   3'- auAUCUGCaCGCAG-----UCGCGGCUGgag -5'
21351 3' -55.9 NC_004778.3 + 8901 0.68 0.773705
Target:  5'- aGUGGACGgggugGCGcgccaCGGCGCCGGCg-- -3'
miRNA:   3'- aUAUCUGCa----CGCa----GUCGCGGCUGgag -5'
21351 3' -55.9 NC_004778.3 + 19674 1.05 0.004281
Target:  5'- -uUGGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 19740 1.05 0.003932
Target:  5'- -uUAGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 19808 0.94 0.02264
Target:  5'- ----aACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auaucUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 19871 0.93 0.027547
Target:  5'- -uUAaACGUGCGUCGGCGCCGACCUCg -3'
miRNA:   3'- auAUcUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 19908 0.93 0.028329
Target:  5'- ----uACGUGCGUCGGCGCCGACCUCg -3'
miRNA:   3'- auaucUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 19962 1 0.009191
Target:  5'- ---uGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auauCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 20026 1.03 0.00522
Target:  5'- -uUGGACGUGCGUCGGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 20131 0.71 0.610745
Target:  5'- --cAGACGUGCccgaaaagcgagGUCGGCGCUGACg-- -3'
miRNA:   3'- auaUCUGCACG------------CAGUCGCGGCUGgag -5'
21351 3' -55.9 NC_004778.3 + 23968 0.84 0.100623
Target:  5'- --gAGACaUGCGUCAGCGCCGACCcCg -3'
miRNA:   3'- auaUCUGcACGCAGUCGCGGCUGGaG- -5'
21351 3' -55.9 NC_004778.3 + 24034 0.96 0.017581
Target:  5'- --gAGACGUGCGUCAGCGCCGACCg- -3'
miRNA:   3'- auaUCUGCACGCAGUCGCGGCUGGag -5'
21351 3' -55.9 NC_004778.3 + 24101 0.95 0.019674
Target:  5'- -uUAGACaUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGcACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 24166 0.84 0.100623
Target:  5'- --gAGACaUGCGUCAGCGCCGACCcCg -3'
miRNA:   3'- auaUCUGcACGCAGUCGCGGCUGGaG- -5'
21351 3' -55.9 NC_004778.3 + 24232 0.96 0.017581
Target:  5'- --gAGACGUGCGUCAGCGCCGACCg- -3'
miRNA:   3'- auaUCUGCACGCAGUCGCGGCUGGag -5'
21351 3' -55.9 NC_004778.3 + 24299 0.95 0.019674
Target:  5'- -uUAGACaUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGcACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 24364 0.84 0.100623
Target:  5'- --gAGACaUGCGUCAGCGCCGACCcCg -3'
miRNA:   3'- auaUCUGcACGCAGUCGCGGCUGGaG- -5'
21351 3' -55.9 NC_004778.3 + 24431 0.96 0.017581
Target:  5'- --gAGACGUGCGUCAGCGCCGACCg- -3'
miRNA:   3'- auaUCUGCACGCAGUCGCGGCUGGag -5'
21351 3' -55.9 NC_004778.3 + 24498 0.88 0.055213
Target:  5'- -uUAGACaUGgGUCAGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGcACgCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 24567 0.7 0.673299
Target:  5'- -uUAGcaaaaGUGCGUCAaCGCCGACCg- -3'
miRNA:   3'- auAUCug---CACGCAGUcGCGGCUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.