miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21351 3' -55.9 NC_004778.3 + 124803 0.84 0.103365
Target:  5'- --cAGACaUGCGUCAGCGCCGACCcCg -3'
miRNA:   3'- auaUCUGcACGCAGUCGCGGCUGGaG- -5'
21351 3' -55.9 NC_004778.3 + 122656 0.97 0.014035
Target:  5'- cUAUAaACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- -AUAUcUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 122402 0.95 0.020811
Target:  5'- ----cGCGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auaucUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 19808 0.94 0.02264
Target:  5'- ----aACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auaucUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 19871 0.93 0.027547
Target:  5'- -uUAaACGUGCGUCGGCGCCGACCUCg -3'
miRNA:   3'- auAUcUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 19908 0.93 0.028329
Target:  5'- ----uACGUGCGUCGGCGCCGACCUCg -3'
miRNA:   3'- auaucUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 66812 0.93 0.028329
Target:  5'- ----uACGUGCGUCGGCGCCGACCUCg -3'
miRNA:   3'- auaucUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 122139 0.91 0.039595
Target:  5'- aAUA-ACGUGCGUCAGCGCCGACCUUg -3'
miRNA:   3'- aUAUcUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 66483 0.9 0.040712
Target:  5'- -uUAGACGUGCGUCGGCGCCGAUC-Cg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGaG- -5'
21351 3' -55.9 NC_004778.3 + 19962 1 0.009191
Target:  5'- ---uGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auauCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 122454 1 0.008686
Target:  5'- -uUAGACGUGCGUCGGCGCCGACCUUg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 66746 1.03 0.00522
Target:  5'- -uUGGACGUGCGUCGGCGCCGACCUCa -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 122608 1.08 0.002429
Target:  5'- cUAUAGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- -AUAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 19740 1.05 0.003932
Target:  5'- -uUAGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 66548 1.05 0.003932
Target:  5'- -uUAGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 66614 1.05 0.003932
Target:  5'- -uUAGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 122301 1.05 0.003932
Target:  5'- -uUAGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 19674 1.05 0.004281
Target:  5'- -uUGGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 20026 1.03 0.00522
Target:  5'- -uUGGACGUGCGUCGGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 66680 1.03 0.00522
Target:  5'- -uUGGACGUGCGUCGGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.