miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21351 3' -55.9 NC_004778.3 + 122546 1.08 0.002429
Target:  5'- cUAUAGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- -AUAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 122608 1.08 0.002429
Target:  5'- cUAUAGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- -AUAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 122301 1.05 0.003932
Target:  5'- -uUAGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 66614 1.05 0.003932
Target:  5'- -uUAGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 66548 1.05 0.003932
Target:  5'- -uUAGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 19740 1.05 0.003932
Target:  5'- -uUAGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 19674 1.05 0.004281
Target:  5'- -uUGGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 99523 1.04 0.004795
Target:  5'- -uUAGACGUGCGUCGGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 20026 1.03 0.00522
Target:  5'- -uUGGACGUGCGUCGGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 66680 1.03 0.00522
Target:  5'- -uUGGACGUGCGUCGGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 66746 1.03 0.00522
Target:  5'- -uUGGACGUGCGUCGGCGCCGACCUCa -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 122454 1 0.008686
Target:  5'- -uUAGACGUGCGUCGGCGCCGACCUUg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 19962 1 0.009191
Target:  5'- ---uGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auauCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 99581 0.98 0.012538
Target:  5'- -uUAGACGUGCGUgAGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAgUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 122656 0.97 0.014035
Target:  5'- cUAUAaACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- -AUAUcUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 99751 0.96 0.017093
Target:  5'- -uUAGACGUGCGUCAGCGCCGACCc- -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGag -5'
21351 3' -55.9 NC_004778.3 + 24034 0.96 0.017581
Target:  5'- --gAGACGUGCGUCAGCGCCGACCg- -3'
miRNA:   3'- auaUCUGCACGCAGUCGCGGCUGGag -5'
21351 3' -55.9 NC_004778.3 + 24232 0.96 0.017581
Target:  5'- --gAGACGUGCGUCAGCGCCGACCg- -3'
miRNA:   3'- auaUCUGCACGCAGUCGCGGCUGGag -5'
21351 3' -55.9 NC_004778.3 + 24431 0.96 0.017581
Target:  5'- --gAGACGUGCGUCAGCGCCGACCg- -3'
miRNA:   3'- auaUCUGCACGCAGUCGCGGCUGGag -5'
21351 3' -55.9 NC_004778.3 + 24299 0.95 0.019674
Target:  5'- -uUAGACaUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGcACGCAGUCGCGGCUGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.