miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21351 3' -55.9 NC_004778.3 + 66614 1.05 0.003932
Target:  5'- -uUAGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 122301 1.05 0.003932
Target:  5'- -uUAGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 19674 1.05 0.004281
Target:  5'- -uUGGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 20026 1.03 0.00522
Target:  5'- -uUGGACGUGCGUCGGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 122402 0.95 0.020811
Target:  5'- ----cGCGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auaucUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 122656 0.97 0.014035
Target:  5'- cUAUAaACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- -AUAUcUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 19962 1 0.009191
Target:  5'- ---uGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auauCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 122454 1 0.008686
Target:  5'- -uUAGACGUGCGUCGGCGCCGACCUUg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 66746 1.03 0.00522
Target:  5'- -uUGGACGUGCGUCGGCGCCGACCUCa -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 66680 1.03 0.00522
Target:  5'- -uUGGACGUGCGUCGGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 8901 0.68 0.773705
Target:  5'- aGUGGACGgggugGCGcgccaCGGCGCCGGCg-- -3'
miRNA:   3'- aUAUCUGCa----CGCa----GUCGCGGCUGgag -5'
21351 3' -55.9 NC_004778.3 + 99817 0.67 0.810729
Target:  5'- -uUAaACaUGCGcCAGCGCCGACCc- -3'
miRNA:   3'- auAUcUGcACGCaGUCGCGGCUGGag -5'
21351 3' -55.9 NC_004778.3 + 94058 0.67 0.818709
Target:  5'- --cGGAUGUGCGUUauauacgAGCGCCGAa--- -3'
miRNA:   3'- auaUCUGCACGCAG-------UCGCGGCUggag -5'
21351 3' -55.9 NC_004778.3 + 125356 0.67 0.819586
Target:  5'- -------uUGCGcCgGGCGCCGACCUCg -3'
miRNA:   3'- auaucugcACGCaG-UCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 123079 0.67 0.834232
Target:  5'- --cGGACGUGUuuaaaaauauuuuaGUCacguguugguGGCGCCGACCcCg -3'
miRNA:   3'- auaUCUGCACG--------------CAG----------UCGCGGCUGGaG- -5'
21351 3' -55.9 NC_004778.3 + 121596 0.67 0.836761
Target:  5'- ----uAUGUGCG-CGGCGCCGACg-- -3'
miRNA:   3'- auaucUGCACGCaGUCGCGGCUGgag -5'
21351 3' -55.9 NC_004778.3 + 85509 0.67 0.836761
Target:  5'- cAUGGACGcggGCGUuugCGGCGgCGAUgUCa -3'
miRNA:   3'- aUAUCUGCa--CGCA---GUCGCgGCUGgAG- -5'
21351 3' -55.9 NC_004778.3 + 47130 0.67 0.836761
Target:  5'- --aAGcGCGUcgGCGUgAGCGCCGGCgCUUu -3'
miRNA:   3'- auaUC-UGCA--CGCAgUCGCGGCUG-GAG- -5'
21351 3' -55.9 NC_004778.3 + 68254 0.66 0.845061
Target:  5'- gGUGGAUGcUGCGUCgcuGGCGCuCGGgCUg -3'
miRNA:   3'- aUAUCUGC-ACGCAG---UCGCG-GCUgGAg -5'
21351 3' -55.9 NC_004778.3 + 99523 1.04 0.004795
Target:  5'- -uUAGACGUGCGUCGGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.