miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21353 3' -53.3 NC_004778.3 + 22571 0.66 0.955988
Target:  5'- gUuuGAUGCCGAcGCGcccguAccGCUGGCGCu -3'
miRNA:   3'- uGggUUGCGGCU-UGU-----UuaCGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 26052 0.69 0.860753
Target:  5'- cGCCCAGCGaCGAGCG--UGCcaGCGCc -3'
miRNA:   3'- -UGGGUUGCgGCUUGUuuACGacCGCG- -5'
21353 3' -53.3 NC_004778.3 + 27343 0.67 0.93261
Target:  5'- uGCUgAAcCGCCGGggACAGGUuguuguaGUUGGCGCu -3'
miRNA:   3'- -UGGgUU-GCGGCU--UGUUUA-------CGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 27498 0.66 0.959449
Target:  5'- gACCaCAugGCCGuguucGACGAAUaccccggGCUGGC-Cg -3'
miRNA:   3'- -UGG-GUugCGGC-----UUGUUUA-------CGACCGcG- -5'
21353 3' -53.3 NC_004778.3 + 28758 0.66 0.943026
Target:  5'- cGCaaaCAGCGCCGAGa----GCUucGGCGCc -3'
miRNA:   3'- -UGg--GUUGCGGCUUguuuaCGA--CCGCG- -5'
21353 3' -53.3 NC_004778.3 + 29046 0.66 0.959821
Target:  5'- uUCCAACGCCucauguACAGuuUGCggaGGUGCg -3'
miRNA:   3'- uGGGUUGCGGcu----UGUUu-ACGa--CCGCG- -5'
21353 3' -53.3 NC_004778.3 + 29419 0.66 0.951914
Target:  5'- uGCUCGuuaaaGCGCuCGuuuuguGCAAuccUGCUGGCGUa -3'
miRNA:   3'- -UGGGU-----UGCG-GCu-----UGUUu--ACGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 29540 0.66 0.941128
Target:  5'- -aCCAACGCCGugguggugucgcccGGCAAAccgcguUGCguguacagccgcuUGGCGCa -3'
miRNA:   3'- ugGGUUGCGGC--------------UUGUUU------ACG-------------ACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 30290 0.68 0.881243
Target:  5'- cGCCCAucaACGCCaugcgcacgcaacaGAACuuGaGCUGGCaGCg -3'
miRNA:   3'- -UGGGU---UGCGG--------------CUUGuuUaCGACCG-CG- -5'
21353 3' -53.3 NC_004778.3 + 31258 0.67 0.933131
Target:  5'- cACCUcGCGCCGAGaaacuUGCguucGCGCg -3'
miRNA:   3'- -UGGGuUGCGGCUUguuu-ACGac--CGCG- -5'
21353 3' -53.3 NC_004778.3 + 31364 0.68 0.876091
Target:  5'- cACCaaguaCGAgGCUGccaAAGUGCUGGCGCc -3'
miRNA:   3'- -UGG-----GUUgCGGCuugUUUACGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 31468 0.71 0.77015
Target:  5'- cGCCCAAuaccacCGCCGAuuauuugGCUGaGCGCa -3'
miRNA:   3'- -UGGGUU------GCGGCUuguuua-CGAC-CGCG- -5'
21353 3' -53.3 NC_004778.3 + 32281 0.7 0.809685
Target:  5'- gGCCggCGGCGCCGuguCGg--GCUGGUGCu -3'
miRNA:   3'- -UGG--GUUGCGGCuu-GUuuaCGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 32296 0.69 0.868536
Target:  5'- gGCCgCGGCGCauugGAGCGccgucGUGCaGGCGCu -3'
miRNA:   3'- -UGG-GUUGCGg---CUUGUu----UACGaCCGCG- -5'
21353 3' -53.3 NC_004778.3 + 33031 0.73 0.659657
Target:  5'- cACCCu-UGCCGc----GUGCUGGCGCa -3'
miRNA:   3'- -UGGGuuGCGGCuuguuUACGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 33417 0.69 0.844532
Target:  5'- cACCagaAACGCggcauaGAAUGGAUGCggcGGCGCg -3'
miRNA:   3'- -UGGg--UUGCGg-----CUUGUUUACGa--CCGCG- -5'
21353 3' -53.3 NC_004778.3 + 33740 0.7 0.791194
Target:  5'- aGCCC-GCGaa-AGCGGAuUGCUGGCGCg -3'
miRNA:   3'- -UGGGuUGCggcUUGUUU-ACGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 33844 0.83 0.209249
Target:  5'- cGCUCAACGCCG-AUAAccGCUGGUGCa -3'
miRNA:   3'- -UGGGUUGCGGCuUGUUuaCGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 34235 0.75 0.503505
Target:  5'- cACCCGGCGCUGAcCAAGUGUUcGGC-Ca -3'
miRNA:   3'- -UGGGUUGCGGCUuGUUUACGA-CCGcG- -5'
21353 3' -53.3 NC_004778.3 + 34290 0.72 0.670191
Target:  5'- aGCCCGcCuaCGAgagcaGCAAGUGCcGGCGCg -3'
miRNA:   3'- -UGGGUuGcgGCU-----UGUUUACGaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.