miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21353 3' -53.3 NC_004778.3 + 308 0.77 0.426668
Target:  5'- uCCC-AC-CUGAGCGcGUGCUGGCGCa -3'
miRNA:   3'- uGGGuUGcGGCUUGUuUACGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 4878 0.7 0.818677
Target:  5'- cGCCCAguguaagggcGCGCgGAAUGuuccccGAUGCUGGCa- -3'
miRNA:   3'- -UGGGU----------UGCGgCUUGU------UUACGACCGcg -5'
21353 3' -53.3 NC_004778.3 + 5141 0.68 0.882693
Target:  5'- aACCCGuucucgaaacaacGCGCCGuGGCAAugucGC-GGCGCa -3'
miRNA:   3'- -UGGGU-------------UGCGGC-UUGUUua--CGaCCGCG- -5'
21353 3' -53.3 NC_004778.3 + 7146 0.68 0.895315
Target:  5'- aAUCCGucucggcgggcggcGCGCCGAGCAcuaGCucguugaggUGGCGCa -3'
miRNA:   3'- -UGGGU--------------UGCGGCUUGUuuaCG---------ACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 7547 0.69 0.844532
Target:  5'- --aCGGCGCgCGAAUuugcuUGCUGGCGUu -3'
miRNA:   3'- uggGUUGCG-GCUUGuuu--ACGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 7718 0.72 0.670191
Target:  5'- uAUUCAACauGCCGAACcAAUGCUcGCGCa -3'
miRNA:   3'- -UGGGUUG--CGGCUUGuUUACGAcCGCG- -5'
21353 3' -53.3 NC_004778.3 + 9204 0.67 0.907776
Target:  5'- -gCCGGCGCuCGAGCGcggcgguuaacuuGUGCgacGGCGCc -3'
miRNA:   3'- ugGGUUGCG-GCUUGUu------------UACGa--CCGCG- -5'
21353 3' -53.3 NC_004778.3 + 9878 0.66 0.947595
Target:  5'- uCCUuacGCGCCGccaAAGUGCcgcccgGGCGCg -3'
miRNA:   3'- uGGGu--UGCGGCuugUUUACGa-----CCGCG- -5'
21353 3' -53.3 NC_004778.3 + 10593 0.66 0.955988
Target:  5'- cCUCAACGCCGcGCAAGUuaaUUGGCa- -3'
miRNA:   3'- uGGGUUGCGGCuUGUUUAc--GACCGcg -5'
21353 3' -53.3 NC_004778.3 + 12044 0.71 0.742461
Target:  5'- cGCUugCAACGCCGGuuGCAAgcGUGCgugcaaGGCGCu -3'
miRNA:   3'- -UGG--GUUGCGGCU--UGUU--UACGa-----CCGCG- -5'
21353 3' -53.3 NC_004778.3 + 12453 0.68 0.876091
Target:  5'- cGCCgguCAugGCCGAgaugGCAAAUGCaaUGGCcCg -3'
miRNA:   3'- -UGG---GUugCGGCU----UGUUUACG--ACCGcG- -5'
21353 3' -53.3 NC_004778.3 + 12904 0.66 0.947595
Target:  5'- cCCCAAgcuCGCCcGACAGcgGaaucGGCGCg -3'
miRNA:   3'- uGGGUU---GCGGcUUGUUuaCga--CCGCG- -5'
21353 3' -53.3 NC_004778.3 + 13358 0.72 0.670191
Target:  5'- aACUCAACGCCau-CAAAUGCgccaGCGCa -3'
miRNA:   3'- -UGGGUUGCGGcuuGUUUACGac--CGCG- -5'
21353 3' -53.3 NC_004778.3 + 14381 0.69 0.827488
Target:  5'- cGCUUug-GCCGGGCAggauucggucaaAGUGCUGGCGUc -3'
miRNA:   3'- -UGGGuugCGGCUUGU------------UUACGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 14722 0.75 0.513543
Target:  5'- gUCCAG-GCCGucCAcAAUGCUGGCGCa -3'
miRNA:   3'- uGGGUUgCGGCuuGU-UUACGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 15838 0.7 0.791194
Target:  5'- cGCgCCAuCGUCGAGCAGuUGUUGGuCGUg -3'
miRNA:   3'- -UG-GGUuGCGGCUUGUUuACGACC-GCG- -5'
21353 3' -53.3 NC_004778.3 + 16194 0.69 0.852749
Target:  5'- aACUCGuuguaGCCGGAaAAGUGCUGGCa- -3'
miRNA:   3'- -UGGGUug---CGGCUUgUUUACGACCGcg -5'
21353 3' -53.3 NC_004778.3 + 17086 0.71 0.772091
Target:  5'- aACCCGACaagGCCGuguuGCu-GUGCgcgcGGCGCg -3'
miRNA:   3'- -UGGGUUG---CGGCu---UGuuUACGa---CCGCG- -5'
21353 3' -53.3 NC_004778.3 + 19878 0.68 0.897342
Target:  5'- uGCgUCGGCGCCGAccucGCAGugcuaucuuacGUGCgucGGCGCc -3'
miRNA:   3'- -UG-GGUUGCGGCU----UGUU-----------UACGa--CCGCG- -5'
21353 3' -53.3 NC_004778.3 + 21288 0.66 0.947595
Target:  5'- uCCCGACGCCGcAgAGcgGCacgucGGCGa -3'
miRNA:   3'- uGGGUUGCGGCuUgUUuaCGa----CCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.