miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21353 3' -53.3 NC_004778.3 + 28758 0.66 0.943026
Target:  5'- cGCaaaCAGCGCCGAGa----GCUucGGCGCc -3'
miRNA:   3'- -UGg--GUUGCGGCUUguuuaCGA--CCGCG- -5'
21353 3' -53.3 NC_004778.3 + 37714 0.66 0.951914
Target:  5'- -aCCAucuUGCCGaAGCAcucguacUGUUGGCGCa -3'
miRNA:   3'- ugGGUu--GCGGC-UUGUuu-----ACGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 68787 0.66 0.951493
Target:  5'- gGCCaCAAgGCCGGuauuguugauuauGCAGGUGUUGcaguuucgcaaGCGCa -3'
miRNA:   3'- -UGG-GUUgCGGCU-------------UGUUUACGAC-----------CGCG- -5'
21353 3' -53.3 NC_004778.3 + 42637 0.66 0.947595
Target:  5'- uCCCGcCGCCGAcggugcACGAGUGCaaGaCGCu -3'
miRNA:   3'- uGGGUuGCGGCU------UGUUUACGacC-GCG- -5'
21353 3' -53.3 NC_004778.3 + 53680 0.66 0.944423
Target:  5'- uGCCCAaugcggcgcaaaacaACGCCGAACuAGAUcGCUuucauucggaaauGcGCGCg -3'
miRNA:   3'- -UGGGU---------------UGCGGCUUG-UUUA-CGA-------------C-CGCG- -5'
21353 3' -53.3 NC_004778.3 + 44474 0.66 0.959821
Target:  5'- uCgCGGCGCCGcuCGuc-GCUGGCGg -3'
miRNA:   3'- uGgGUUGCGGCuuGUuuaCGACCGCg -5'
21353 3' -53.3 NC_004778.3 + 60517 0.66 0.959821
Target:  5'- -aCCAAacCGCUGGA-----GCUGGCGCg -3'
miRNA:   3'- ugGGUU--GCGGCUUguuuaCGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 27498 0.66 0.959449
Target:  5'- gACCaCAugGCCGuguucGACGAAUaccccggGCUGGC-Cg -3'
miRNA:   3'- -UGG-GUugCGGC-----UUGUUUA-------CGACCGcG- -5'
21353 3' -53.3 NC_004778.3 + 47716 0.66 0.943026
Target:  5'- cGCCU---GCUGAaaACGAugccGCUGGCGCa -3'
miRNA:   3'- -UGGGuugCGGCU--UGUUua--CGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 109972 0.66 0.955988
Target:  5'- cGCCCAuuACGUgCGAcgACAA--GCUGGUGUc -3'
miRNA:   3'- -UGGGU--UGCG-GCU--UGUUuaCGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 61070 0.66 0.951914
Target:  5'- aAUCgCGGCGCCGAcUGAAUGC--GCGCu -3'
miRNA:   3'- -UGG-GUUGCGGCUuGUUUACGacCGCG- -5'
21353 3' -53.3 NC_004778.3 + 29046 0.66 0.959821
Target:  5'- uUCCAACGCCucauguACAGuuUGCggaGGUGCg -3'
miRNA:   3'- uGGGUUGCGGcu----UGUUu-ACGa--CCGCG- -5'
21353 3' -53.3 NC_004778.3 + 61292 0.66 0.938205
Target:  5'- -aCCG--GCCG-ACAucugguuUGCUGGCGCa -3'
miRNA:   3'- ugGGUugCGGCuUGUuu-----ACGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 29419 0.66 0.951914
Target:  5'- uGCUCGuuaaaGCGCuCGuuuuguGCAAuccUGCUGGCGUa -3'
miRNA:   3'- -UGGGU-----UGCG-GCu-----UGUUu--ACGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 95199 0.66 0.959821
Target:  5'- uGCCCGGCuGCCGA-CGGGcUGCUGcccGUGUu -3'
miRNA:   3'- -UGGGUUG-CGGCUuGUUU-ACGAC---CGCG- -5'
21353 3' -53.3 NC_004778.3 + 71218 0.66 0.959821
Target:  5'- -aUCAGgcCGCUGuGCAGcgGCUGGaCGCg -3'
miRNA:   3'- ugGGUU--GCGGCuUGUUuaCGACC-GCG- -5'
21353 3' -53.3 NC_004778.3 + 115146 0.66 0.938205
Target:  5'- -gCCAGCGCgGGuCAuaauGUGgUGGUGCu -3'
miRNA:   3'- ugGGUUGCGgCUuGUu---UACgACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 9878 0.66 0.947595
Target:  5'- uCCUuacGCGCCGccaAAGUGCcgcccgGGCGCg -3'
miRNA:   3'- uGGGu--UGCGGCuugUUUACGa-----CCGCG- -5'
21353 3' -53.3 NC_004778.3 + 86249 0.66 0.959449
Target:  5'- -gCCAACGCUGGgccagcccaACAugaauauacacacGGUGCUGGUGa -3'
miRNA:   3'- ugGGUUGCGGCU---------UGU-------------UUACGACCGCg -5'
21353 3' -53.3 NC_004778.3 + 49594 0.66 0.938205
Target:  5'- gGCaCCGACagguaGCCGuGCGAGcgcacUGCgGGCGCu -3'
miRNA:   3'- -UG-GGUUG-----CGGCuUGUUU-----ACGaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.