Results 1 - 20 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21353 | 3' | -53.3 | NC_004778.3 | + | 31468 | 0.71 | 0.77015 |
Target: 5'- cGCCCAAuaccacCGCCGAuuauuugGCUGaGCGCa -3' miRNA: 3'- -UGGGUU------GCGGCUuguuua-CGAC-CGCG- -5' |
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21353 | 3' | -53.3 | NC_004778.3 | + | 55267 | 0.72 | 0.701559 |
Target: 5'- --aCAAUGCUGGaaguguACGAGUcGCUGGCGCg -3' miRNA: 3'- uggGUUGCGGCU------UGUUUA-CGACCGCG- -5' |
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21353 | 3' | -53.3 | NC_004778.3 | + | 106448 | 0.72 | 0.701559 |
Target: 5'- gUCCAacGCGCUGAGCGc--GCUGcGCGCg -3' miRNA: 3'- uGGGU--UGCGGCUUGUuuaCGAC-CGCG- -5' |
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21353 | 3' | -53.3 | NC_004778.3 | + | 35820 | 0.72 | 0.711904 |
Target: 5'- gACCCGGCGCCGcaccAACAAGcGCcuugGGgGCc -3' miRNA: 3'- -UGGGUUGCGGC----UUGUUUaCGa---CCgCG- -5' |
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21353 | 3' | -53.3 | NC_004778.3 | + | 123432 | 0.72 | 0.711904 |
Target: 5'- -gUCGACGUCGAGgAugaGCUGGCGCc -3' miRNA: 3'- ugGGUUGCGGCUUgUuuaCGACCGCG- -5' |
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21353 | 3' | -53.3 | NC_004778.3 | + | 64576 | 0.72 | 0.722175 |
Target: 5'- uGCCgCAACGgUGAGCA--UGUugUGGCGCa -3' miRNA: 3'- -UGG-GUUGCgGCUUGUuuACG--ACCGCG- -5' |
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21353 | 3' | -53.3 | NC_004778.3 | + | 111811 | 0.72 | 0.722175 |
Target: 5'- gGCC--GCGCCGGuaACAAggGCgagGGCGCc -3' miRNA: 3'- -UGGguUGCGGCU--UGUUuaCGa--CCGCG- -5' |
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21353 | 3' | -53.3 | NC_004778.3 | + | 103783 | 0.72 | 0.722175 |
Target: 5'- cGCCgCAACGCaaGAACGGuUGCacgugUGGCGCg -3' miRNA: 3'- -UGG-GUUGCGg-CUUGUUuACG-----ACCGCG- -5' |
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21353 | 3' | -53.3 | NC_004778.3 | + | 113887 | 0.71 | 0.742461 |
Target: 5'- gGCCgGgcGCGUCGGGCGAagGC-GGCGCc -3' miRNA: 3'- -UGGgU--UGCGGCUUGUUuaCGaCCGCG- -5' |
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21353 | 3' | -53.3 | NC_004778.3 | + | 113002 | 0.72 | 0.677547 |
Target: 5'- -aCUGGCGCCGuuugcguccauaacGACGAGUGCuguagUGGCGCa -3' miRNA: 3'- ugGGUUGCGGC--------------UUGUUUACG-----ACCGCG- -5' |
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21353 | 3' | -53.3 | NC_004778.3 | + | 34290 | 0.72 | 0.670191 |
Target: 5'- aGCCCGcCuaCGAgagcaGCAAGUGCcGGCGCg -3' miRNA: 3'- -UGGGUuGcgGCU-----UGUUUACGaCCGCG- -5' |
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21353 | 3' | -53.3 | NC_004778.3 | + | 13358 | 0.72 | 0.670191 |
Target: 5'- aACUCAACGCCau-CAAAUGCgccaGCGCa -3' miRNA: 3'- -UGGGUUGCGGcuuGUUUACGac--CGCG- -5' |
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21353 | 3' | -53.3 | NC_004778.3 | + | 33844 | 0.83 | 0.209249 |
Target: 5'- cGCUCAACGCCG-AUAAccGCUGGUGCa -3' miRNA: 3'- -UGGGUUGCGGCuUGUUuaCGACCGCG- -5' |
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21353 | 3' | -53.3 | NC_004778.3 | + | 308 | 0.77 | 0.426668 |
Target: 5'- uCCC-AC-CUGAGCGcGUGCUGGCGCa -3' miRNA: 3'- uGGGuUGcGGCUUGUuUACGACCGCG- -5' |
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21353 | 3' | -53.3 | NC_004778.3 | + | 61651 | 0.77 | 0.435898 |
Target: 5'- cGCgCCAACGCCGcGCGcAUGCUGG-GCc -3' miRNA: 3'- -UG-GGUUGCGGCuUGUuUACGACCgCG- -5' |
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21353 | 3' | -53.3 | NC_004778.3 | + | 34235 | 0.75 | 0.503505 |
Target: 5'- cACCCGGCGCUGAcCAAGUGUUcGGC-Ca -3' miRNA: 3'- -UGGGUUGCGGCUuGUUUACGA-CCGcG- -5' |
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21353 | 3' | -53.3 | NC_004778.3 | + | 70222 | 0.75 | 0.544123 |
Target: 5'- cGCCCaAGCGCCGGACA---GCacgGGCGUc -3' miRNA: 3'- -UGGG-UUGCGGCUUGUuuaCGa--CCGCG- -5' |
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21353 | 3' | -53.3 | NC_004778.3 | + | 121707 | 0.74 | 0.564837 |
Target: 5'- gGCCC-GCGUCGGGCAcguUGUcGGCGCg -3' miRNA: 3'- -UGGGuUGCGGCUUGUuu-ACGaCCGCG- -5' |
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21353 | 3' | -53.3 | NC_004778.3 | + | 33031 | 0.73 | 0.659657 |
Target: 5'- cACCCu-UGCCGc----GUGCUGGCGCa -3' miRNA: 3'- -UGGGuuGCGGCuuguuUACGACCGCG- -5' |
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21353 | 3' | -53.3 | NC_004778.3 | + | 7718 | 0.72 | 0.670191 |
Target: 5'- uAUUCAACauGCCGAACcAAUGCUcGCGCa -3' miRNA: 3'- -UGGGUUG--CGGCUUGuUUACGAcCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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