miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21353 3' -53.3 NC_004778.3 + 129278 1.11 0.002879
Target:  5'- uACCCAACGCCGAACAAAUGCUGGCGCu -3'
miRNA:   3'- -UGGGUUGCGGCUUGUUUACGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 33844 0.83 0.209249
Target:  5'- cGCUCAACGCCG-AUAAccGCUGGUGCa -3'
miRNA:   3'- -UGGGUUGCGGCuUGUUuaCGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 90965 0.77 0.408563
Target:  5'- uGCCCG--GCCGAGCuGGUaGCUGGCGUa -3'
miRNA:   3'- -UGGGUugCGGCUUGuUUA-CGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 308 0.77 0.426668
Target:  5'- uCCC-AC-CUGAGCGcGUGCUGGCGCa -3'
miRNA:   3'- uGGGuUGcGGCUUGUuUACGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 61651 0.77 0.435898
Target:  5'- cGCgCCAACGCCGcGCGcAUGCUGG-GCc -3'
miRNA:   3'- -UG-GGUUGCGGCuUGUuUACGACCgCG- -5'
21353 3' -53.3 NC_004778.3 + 81890 0.77 0.445241
Target:  5'- cACCCGccGCGCCGGAUAuc-GCaGGCGCc -3'
miRNA:   3'- -UGGGU--UGCGGCUUGUuuaCGaCCGCG- -5'
21353 3' -53.3 NC_004778.3 + 34235 0.75 0.503505
Target:  5'- cACCCGGCGCUGAcCAAGUGUUcGGC-Ca -3'
miRNA:   3'- -UGGGUUGCGGCUuGUUUACGA-CCGcG- -5'
21353 3' -53.3 NC_004778.3 + 14722 0.75 0.513543
Target:  5'- gUCCAG-GCCGucCAcAAUGCUGGCGCa -3'
miRNA:   3'- uGGGUUgCGGCuuGU-UUACGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 45772 0.75 0.544123
Target:  5'- aACUCAACGCCGcGACGAGggcgcgGCUaugcagaaGGCGCg -3'
miRNA:   3'- -UGGGUUGCGGC-UUGUUUa-----CGA--------CCGCG- -5'
21353 3' -53.3 NC_004778.3 + 70222 0.75 0.544123
Target:  5'- cGCCCaAGCGCCGGACA---GCacgGGCGUc -3'
miRNA:   3'- -UGGG-UUGCGGCUUGUuuaCGa--CCGCG- -5'
21353 3' -53.3 NC_004778.3 + 38457 0.74 0.564837
Target:  5'- uGCUCGGCGCgCGGucGCGugcgcGCUGGCGCa -3'
miRNA:   3'- -UGGGUUGCG-GCU--UGUuua--CGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 121707 0.74 0.564837
Target:  5'- gGCCC-GCGUCGGGCAcguUGUcGGCGCg -3'
miRNA:   3'- -UGGGuUGCGGCUUGUuu-ACGaCCGCG- -5'
21353 3' -53.3 NC_004778.3 + 65454 0.73 0.617372
Target:  5'- uGCCCGAUuCUGuGCAAAcGUUGGCGCg -3'
miRNA:   3'- -UGGGUUGcGGCuUGUUUaCGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 33031 0.73 0.659657
Target:  5'- cACCCu-UGCCGc----GUGCUGGCGCa -3'
miRNA:   3'- -UGGGuuGCGGCuuguuUACGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 34290 0.72 0.670191
Target:  5'- aGCCCGcCuaCGAgagcaGCAAGUGCcGGCGCg -3'
miRNA:   3'- -UGGGUuGcgGCU-----UGUUUACGaCCGCG- -5'
21353 3' -53.3 NC_004778.3 + 7718 0.72 0.670191
Target:  5'- uAUUCAACauGCCGAACcAAUGCUcGCGCa -3'
miRNA:   3'- -UGGGUUG--CGGCUUGuUUACGAcCGCG- -5'
21353 3' -53.3 NC_004778.3 + 13358 0.72 0.670191
Target:  5'- aACUCAACGCCau-CAAAUGCgccaGCGCa -3'
miRNA:   3'- -UGGGUUGCGGcuuGUUUACGac--CGCG- -5'
21353 3' -53.3 NC_004778.3 + 113002 0.72 0.677547
Target:  5'- -aCUGGCGCCGuuugcguccauaacGACGAGUGCuguagUGGCGCa -3'
miRNA:   3'- ugGGUUGCGGC--------------UUGUUUACG-----ACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 106448 0.72 0.701559
Target:  5'- gUCCAacGCGCUGAGCGc--GCUGcGCGCg -3'
miRNA:   3'- uGGGU--UGCGGCUUGUuuaCGAC-CGCG- -5'
21353 3' -53.3 NC_004778.3 + 55267 0.72 0.701559
Target:  5'- --aCAAUGCUGGaaguguACGAGUcGCUGGCGCg -3'
miRNA:   3'- uggGUUGCGGCU------UGUUUA-CGACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.