miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21373 3' -59 NC_004812.1 + 78846 0.68 0.683394
Target:  5'- cGGugUcCCCCGAggagcccgGGGAGGgcggaggccgcCCCCAc- -3'
miRNA:   3'- -CCugAaGGGGCUa-------CCCUCC-----------GGGGUau -5'
21373 3' -59 NC_004812.1 + 137374 0.66 0.770134
Target:  5'- cGGAgUUcgagCCCCG--GGGGGGCgCCGUGg -3'
miRNA:   3'- -CCUgAA----GGGGCuaCCCUCCGgGGUAU- -5'
21373 3' -59 NC_004812.1 + 126296 0.68 0.683394
Target:  5'- gGGGCcgUUCCUGGUGcccgcGGAGGuCCCCAg- -3'
miRNA:   3'- -CCUGa-AGGGGCUAC-----CCUCC-GGGGUau -5'
21373 3' -59 NC_004812.1 + 37208 0.75 0.320296
Target:  5'- cGGCgcCCCCGGgcacgcGGGGGGCCCCGg- -3'
miRNA:   3'- cCUGaaGGGGCUa-----CCCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 112544 0.66 0.770134
Target:  5'- cGGGCgcCCgCCGAgcgGGGGGGCgCgCCGUc -3'
miRNA:   3'- -CCUGaaGG-GGCUa--CCCUCCG-G-GGUAu -5'
21373 3' -59 NC_004812.1 + 75160 0.67 0.751464
Target:  5'- gGGAggcCCCCGAucgccUGGGgcccuGGGCCCCGg- -3'
miRNA:   3'- -CCUgaaGGGGCU-----ACCC-----UCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 35393 0.66 0.779296
Target:  5'- uGGAUgaCCCCGGUGGGcGGCaugcuguucgaCCAg- -3'
miRNA:   3'- -CCUGaaGGGGCUACCCuCCGg----------GGUau -5'
21373 3' -59 NC_004812.1 + 2130 0.66 0.805986
Target:  5'- ----gUCCCaguccgGGGAGGCCCCGc- -3'
miRNA:   3'- ccugaAGGGgcua--CCCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 148432 0.76 0.248723
Target:  5'- cGGACcccggCCCgGAcccaUGGGGGGCCCCAg- -3'
miRNA:   3'- -CCUGaa---GGGgCU----ACCCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 154881 1.09 0.001558
Target:  5'- cGGACUUCCCCGAUGGGAGGCCCCAUAa -3'
miRNA:   3'- -CCUGAAGGGGCUACCCUCCGGGGUAU- -5'
21373 3' -59 NC_004812.1 + 105035 0.74 0.357597
Target:  5'- cGGCcUCCgCGAUGGGAGGCgCCGc- -3'
miRNA:   3'- cCUGaAGGgGCUACCCUCCGgGGUau -5'
21373 3' -59 NC_004812.1 + 62032 0.71 0.505273
Target:  5'- aGGCggCCUCGGgcgGaGGAGGCCCCGa- -3'
miRNA:   3'- cCUGaaGGGGCUa--C-CCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 14221 0.74 0.334858
Target:  5'- cGGGCgcccuuuaUCCCCGGUGcGAGGUCCCAc- -3'
miRNA:   3'- -CCUGa-------AGGGGCUACcCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 120267 0.71 0.483633
Target:  5'- cGGGCgcgaguccucuuccgCCCCucUGGGGGGCCCCcgGc -3'
miRNA:   3'- -CCUGaa-------------GGGGcuACCCUCCGGGGuaU- -5'
21373 3' -59 NC_004812.1 + 137238 0.66 0.770134
Target:  5'- uGGACgUCCgCgCGGUGGGcGGGCUCaCGUGc -3'
miRNA:   3'- -CCUGaAGG-G-GCUACCC-UCCGGG-GUAU- -5'
21373 3' -59 NC_004812.1 + 8410 0.66 0.760854
Target:  5'- gGGGCUcggCCCCGGccguaccGGAGGCCgCCGc- -3'
miRNA:   3'- -CCUGAa--GGGGCUac-----CCUCCGG-GGUau -5'
21373 3' -59 NC_004812.1 + 101896 0.66 0.758985
Target:  5'- cGGGCUagggcgCCCCGAggcgcggcggucGGGccucgGGGCCCCGg- -3'
miRNA:   3'- -CCUGAa-----GGGGCUa-----------CCC-----UCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 125592 0.67 0.751464
Target:  5'- cGGGC-UCCCgGgcGGGcucccGGCCCCGc- -3'
miRNA:   3'- -CCUGaAGGGgCuaCCCu----CCGGGGUau -5'
21373 3' -59 NC_004812.1 + 60465 0.69 0.613305
Target:  5'- cGACggCCCCGAaGaGGAGGCCggCCAg- -3'
miRNA:   3'- cCUGaaGGGGCUaC-CCUCCGG--GGUau -5'
21373 3' -59 NC_004812.1 + 123889 0.69 0.613305
Target:  5'- --cCUcCCCCGAcGGGGcGGCCCCGa- -3'
miRNA:   3'- ccuGAaGGGGCUaCCCU-CCGGGGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.