Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21373 | 3' | -59 | NC_004812.1 | + | 33796 | 0.69 | 0.600286 |
Target: 5'- uGGACUUCaucuggguggaccgCCCGG-GGGAGcccGCCCCGUc -3' miRNA: 3'- -CCUGAAG--------------GGGCUaCCCUC---CGGGGUAu -5' |
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21373 | 3' | -59 | NC_004812.1 | + | 35393 | 0.66 | 0.779296 |
Target: 5'- uGGAUgaCCCCGGUGGGcGGCaugcuguucgaCCAg- -3' miRNA: 3'- -CCUGaaGGGGCUACCCuCCGg----------GGUau -5' |
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21373 | 3' | -59 | NC_004812.1 | + | 36276 | 0.66 | 0.79723 |
Target: 5'- cGGGCUcUCCCgCGgcGGGAGGggggucggggucUCCCAg- -3' miRNA: 3'- -CCUGA-AGGG-GCuaCCCUCC------------GGGGUau -5' |
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21373 | 3' | -59 | NC_004812.1 | + | 37208 | 0.75 | 0.320296 |
Target: 5'- cGGCgcCCCCGGgcacgcGGGGGGCCCCGg- -3' miRNA: 3'- cCUGaaGGGGCUa-----CCCUCCGGGGUau -5' |
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21373 | 3' | -59 | NC_004812.1 | + | 38379 | 0.66 | 0.778385 |
Target: 5'- cGGGCggcggggCCCGccGGGAgcucggcgacguaGGCCCCGUAg -3' miRNA: 3'- -CCUGaag----GGGCuaCCCU-------------CCGGGGUAU- -5' |
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21373 | 3' | -59 | NC_004812.1 | + | 39311 | 0.66 | 0.760854 |
Target: 5'- gGGGCUcggCCCCGGccguaccGGAGGCCgCCGc- -3' miRNA: 3'- -CCUGAa--GGGGCUac-----CCUCCGG-GGUau -5' |
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21373 | 3' | -59 | NC_004812.1 | + | 44716 | 0.69 | 0.613305 |
Target: 5'- -cGCUUUCCCGgcGGG-GGUCCCGg- -3' miRNA: 3'- ccUGAAGGGGCuaCCCuCCGGGGUau -5' |
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21373 | 3' | -59 | NC_004812.1 | + | 45123 | 0.7 | 0.553639 |
Target: 5'- gGGGCgaugUCCCCaGAgggguccacGGGGGGCCUCAc- -3' miRNA: 3'- -CCUGa---AGGGG-CUa--------CCCUCCGGGGUau -5' |
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21373 | 3' | -59 | NC_004812.1 | + | 46475 | 0.67 | 0.751464 |
Target: 5'- uGGACggCCUCa--GGGAGGgCCCCGa- -3' miRNA: 3'- -CCUGaaGGGGcuaCCCUCC-GGGGUau -5' |
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21373 | 3' | -59 | NC_004812.1 | + | 49795 | 0.66 | 0.805117 |
Target: 5'- cGGGCccUCCCGcgGGGcccagucggcgcgAGGCCCCc-- -3' miRNA: 3'- -CCUGaaGGGGCuaCCC-------------UCCGGGGuau -5' |
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21373 | 3' | -59 | NC_004812.1 | + | 50970 | 0.67 | 0.722724 |
Target: 5'- gGGugUaCCCCGGcgUGGuGuuuccGGGCCCCAg- -3' miRNA: 3'- -CCugAaGGGGCU--ACC-C-----UCCGGGGUau -5' |
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21373 | 3' | -59 | NC_004812.1 | + | 60465 | 0.69 | 0.613305 |
Target: 5'- cGACggCCCCGAaGaGGAGGCCggCCAg- -3' miRNA: 3'- cCUGaaGGGGCUaC-CCUCCGG--GGUau -5' |
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21373 | 3' | -59 | NC_004812.1 | + | 62032 | 0.71 | 0.505273 |
Target: 5'- aGGCggCCUCGGgcgGaGGAGGCCCCGa- -3' miRNA: 3'- cCUGaaGGGGCUa--C-CCUCCGGGGUau -5' |
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21373 | 3' | -59 | NC_004812.1 | + | 64715 | 0.67 | 0.712982 |
Target: 5'- cGACUUCCCCGAggccgcGGGcaugcGcGCCCCcgGg -3' miRNA: 3'- cCUGAAGGGGCUa-----CCCu----C-CGGGGuaU- -5' |
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21373 | 3' | -59 | NC_004812.1 | + | 71911 | 0.69 | 0.593291 |
Target: 5'- cGACgcgucCCCCGGUGcGGGccuGGCCCCGa- -3' miRNA: 3'- cCUGaa---GGGGCUAC-CCU---CCGGGGUau -5' |
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21373 | 3' | -59 | NC_004812.1 | + | 75160 | 0.67 | 0.751464 |
Target: 5'- gGGAggcCCCCGAucgccUGGGgcccuGGGCCCCGg- -3' miRNA: 3'- -CCUgaaGGGGCU-----ACCC-----UCCGGGGUau -5' |
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21373 | 3' | -59 | NC_004812.1 | + | 76197 | 0.67 | 0.707105 |
Target: 5'- gGGACgggUCCCCGgcGGaGcccucggcgugcagcAGGCCCCcgAa -3' miRNA: 3'- -CCUGa--AGGGGCuaCC-C---------------UCCGGGGuaU- -5' |
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21373 | 3' | -59 | NC_004812.1 | + | 78846 | 0.68 | 0.683394 |
Target: 5'- cGGugUcCCCCGAggagcccgGGGAGGgcggaggccgcCCCCAc- -3' miRNA: 3'- -CCugAaGGGGCUa-------CCCUCC-----------GGGGUau -5' |
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21373 | 3' | -59 | NC_004812.1 | + | 79743 | 0.67 | 0.751464 |
Target: 5'- cGGACaUCCCCGggGGGuGGacgugccugCCCGa- -3' miRNA: 3'- -CCUGaAGGGGCuaCCCuCCg--------GGGUau -5' |
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21373 | 3' | -59 | NC_004812.1 | + | 80426 | 0.67 | 0.712982 |
Target: 5'- gGGACccgUCCCCGAgcGGccGGGCCCUg-- -3' miRNA: 3'- -CCUGa--AGGGGCUacCC--UCCGGGGuau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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