miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21373 3' -59 NC_004812.1 + 83 0.67 0.751464
Target:  5'- cGGGC-UCCCgGgcGGGcucccGGCCCCGc- -3'
miRNA:   3'- -CCUGaAGGGgCuaCCCu----CCGGGGUau -5'
21373 3' -59 NC_004812.1 + 1232 0.66 0.805986
Target:  5'- gGGGCUccUCCCCGcccGGGcGGCgCCGc- -3'
miRNA:   3'- -CCUGA--AGGGGCua-CCCuCCGgGGUau -5'
21373 3' -59 NC_004812.1 + 2130 0.66 0.805986
Target:  5'- ----gUCCCaguccgGGGAGGCCCCGc- -3'
miRNA:   3'- ccugaAGGGgcua--CCCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 2895 0.69 0.600286
Target:  5'- uGGACUUCaucuggguggaccgCCCGG-GGGAGcccGCCCCGUc -3'
miRNA:   3'- -CCUGAAG--------------GGGCUaCCCUC---CGGGGUAu -5'
21373 3' -59 NC_004812.1 + 3521 0.68 0.683394
Target:  5'- cGGCggCCCCGggGGcGGGGCCgCGg- -3'
miRNA:   3'- cCUGaaGGGGCuaCC-CUCCGGgGUau -5'
21373 3' -59 NC_004812.1 + 4492 0.66 0.779296
Target:  5'- uGGAUgaCCCCGGUGGGcGGCaugcuguucgaCCAg- -3'
miRNA:   3'- -CCUGaaGGGGCUACCCuCCGg----------GGUau -5'
21373 3' -59 NC_004812.1 + 5375 0.66 0.79723
Target:  5'- cGGGCUcUCCCgCGgcGGGAGGggggucggggucUCCCAg- -3'
miRNA:   3'- -CCUGA-AGGG-GCuaCCCUCC------------GGGGUau -5'
21373 3' -59 NC_004812.1 + 6307 0.75 0.320296
Target:  5'- cGGCgcCCCCGGgcacgcGGGGGGCCCCGg- -3'
miRNA:   3'- cCUGaaGGGGCUa-----CCCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 8410 0.66 0.760854
Target:  5'- gGGGCUcggCCCCGGccguaccGGAGGCCgCCGc- -3'
miRNA:   3'- -CCUGAa--GGGGCUac-----CCUCCGG-GGUau -5'
21373 3' -59 NC_004812.1 + 14221 0.74 0.334858
Target:  5'- cGGGCgcccuuuaUCCCCGGUGcGAGGUCCCAc- -3'
miRNA:   3'- -CCUGa-------AGGGGCUACcCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 19759 0.66 0.805986
Target:  5'- ------gCCCGGUGcGGGGGUCCCAg- -3'
miRNA:   3'- ccugaagGGGCUAC-CCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 20592 0.68 0.663452
Target:  5'- cGAUggCCCCGcgGGcGGGGCgCCCGc- -3'
miRNA:   3'- cCUGaaGGGGCuaCC-CUCCG-GGGUau -5'
21373 3' -59 NC_004812.1 + 21244 0.66 0.805986
Target:  5'- gGGACcUCCCCGu-----GGCCCCAg- -3'
miRNA:   3'- -CCUGaAGGGGCuacccuCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 22677 0.72 0.471601
Target:  5'- aGGuccuCUUCCgCGAUGGGcaggccggcgaguagAGGCCCCGc- -3'
miRNA:   3'- -CCu---GAAGGgGCUACCC---------------UCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 24489 0.67 0.732391
Target:  5'- cGGCcgcUCCUgGAcGGGGGGCCCCc-- -3'
miRNA:   3'- cCUGa--AGGGgCUaCCCUCCGGGGuau -5'
21373 3' -59 NC_004812.1 + 28317 0.66 0.788331
Target:  5'- ----aUUCCCGGUGGGccgccuuGGCCgCCAUAa -3'
miRNA:   3'- ccugaAGGGGCUACCCu------CCGG-GGUAU- -5'
21373 3' -59 NC_004812.1 + 28975 0.69 0.619323
Target:  5'- gGGGCcUCCCCGGacugggacugggacUGGGAGcgcggcccgggccGCCCCGa- -3'
miRNA:   3'- -CCUGaAGGGGCU--------------ACCCUC-------------CGGGGUau -5'
21373 3' -59 NC_004812.1 + 30076 0.68 0.683394
Target:  5'- cGGGCggccgggCCCuCGcgGGGGcgcGGCCCCGg- -3'
miRNA:   3'- -CCUGaa-----GGG-GCuaCCCU---CCGGGGUau -5'
21373 3' -59 NC_004812.1 + 30775 0.66 0.805986
Target:  5'- cGGGCgagccggCCCCGccugcgGGGccgcgggccgaGGGCCCCAc- -3'
miRNA:   3'- -CCUGaa-----GGGGCua----CCC-----------UCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 32133 0.66 0.805986
Target:  5'- gGGGCUccUCCCCGcccGGGcGGCgCCGc- -3'
miRNA:   3'- -CCUGA--AGGGGCua-CCCuCCGgGGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.