miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21373 3' -59 NC_004812.1 + 123980 1.09 0.001558
Target:  5'- cGGACUUCCCCGAUGGGAGGCCCCAUAa -3'
miRNA:   3'- -CCUGAAGGGGCUACCCUCCGGGGUAU- -5'
21373 3' -59 NC_004812.1 + 154881 1.09 0.001558
Target:  5'- cGGACUUCCCCGAUGGGAGGCCCCAUAa -3'
miRNA:   3'- -CCUGAAGGGGCUACCCUCCGGGGUAU- -5'
21373 3' -59 NC_004812.1 + 117531 0.76 0.248723
Target:  5'- cGGACcccggCCCgGAcccaUGGGGGGCCCCAg- -3'
miRNA:   3'- -CCUGaa---GGGgCU----ACCCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 148432 0.76 0.248723
Target:  5'- cGGACcccggCCCgGAcccaUGGGGGGCCCCAg- -3'
miRNA:   3'- -CCUGaa---GGGgCU----ACCCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 6307 0.75 0.320296
Target:  5'- cGGCgcCCCCGGgcacgcGGGGGGCCCCGg- -3'
miRNA:   3'- cCUGaaGGGGCUa-----CCCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 37208 0.75 0.320296
Target:  5'- cGGCgcCCCCGGgcacgcGGGGGGCCCCGg- -3'
miRNA:   3'- cCUGaaGGGGCUa-----CCCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 14221 0.74 0.334858
Target:  5'- cGGGCgcccuuuaUCCCCGGUGcGAGGUCCCAc- -3'
miRNA:   3'- -CCUGa-------AGGGGCUACcCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 105035 0.74 0.357597
Target:  5'- cGGCcUCCgCGAUGGGAGGCgCCGc- -3'
miRNA:   3'- cCUGaAGGgGCUACCCUCCGgGGUau -5'
21373 3' -59 NC_004812.1 + 113338 0.72 0.42334
Target:  5'- uGGGCUccggugcuggguUCCUCGGUGGGGGGCuacaaCCCGg- -3'
miRNA:   3'- -CCUGA------------AGGGGCUACCCUCCG-----GGGUau -5'
21373 3' -59 NC_004812.1 + 22677 0.72 0.471601
Target:  5'- aGGuccuCUUCCgCGAUGGGcaggccggcgaguagAGGCCCCGc- -3'
miRNA:   3'- -CCu---GAAGGgGCUACCC---------------UCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 151051 0.71 0.483633
Target:  5'- cGGGCgcgaguccuccuccgCCCCucUGGGGGGCCCCcgGc -3'
miRNA:   3'- -CCUGaa-------------GGGGcuACCCUCCGGGGuaU- -5'
21373 3' -59 NC_004812.1 + 151168 0.71 0.483633
Target:  5'- cGGGCgcgaguccucuuccgCCCCucUGGGGGGCCCCcgGc -3'
miRNA:   3'- -CCUGaa-------------GGGGcuACCCUCCGGGGuaU- -5'
21373 3' -59 NC_004812.1 + 120150 0.71 0.483633
Target:  5'- cGGGCgcgaguccuccuccgCCCCucUGGGGGGCCCCcgGc -3'
miRNA:   3'- -CCUGaa-------------GGGGcuACCCUCCGGGGuaU- -5'
21373 3' -59 NC_004812.1 + 120267 0.71 0.483633
Target:  5'- cGGGCgcgaguccucuuccgCCCCucUGGGGGGCCCCcgGc -3'
miRNA:   3'- -CCUGaa-------------GGGGcuACCCUCCGGGGuaU- -5'
21373 3' -59 NC_004812.1 + 62032 0.71 0.505273
Target:  5'- aGGCggCCUCGGgcgGaGGAGGCCCCGa- -3'
miRNA:   3'- cCUGaaGGGGCUa--C-CCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 155088 0.7 0.5341
Target:  5'- aGGGCgggCgCCCG--GGGAcGGCCCCGUGa -3'
miRNA:   3'- -CCUGaa-G-GGGCuaCCCU-CCGGGGUAU- -5'
21373 3' -59 NC_004812.1 + 124187 0.7 0.5341
Target:  5'- aGGGCgggCgCCCG--GGGAcGGCCCCGUGa -3'
miRNA:   3'- -CCUGaa-G-GGGCuaCCCU-CCGGGGUAU- -5'
21373 3' -59 NC_004812.1 + 106815 0.7 0.543841
Target:  5'- cGACUgggCCCCGc-GGGAGGgCCCGc- -3'
miRNA:   3'- cCUGAa--GGGGCuaCCCUCCgGGGUau -5'
21373 3' -59 NC_004812.1 + 45123 0.7 0.553639
Target:  5'- gGGGCgaugUCCCCaGAgggguccacGGGGGGCCUCAc- -3'
miRNA:   3'- -CCUGa---AGGGG-CUa--------CCCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 110064 0.7 0.563489
Target:  5'- gGGGCUcgggCCCGAcgGGGAguacggagaGGCCCCGUGg -3'
miRNA:   3'- -CCUGAag--GGGCUa-CCCU---------CCGGGGUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.