miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21373 3' -59 NC_004812.1 + 156493 0.67 0.751464
Target:  5'- cGGGC-UCCCgGgcGGGcucccGGCCCCGc- -3'
miRNA:   3'- -CCUGaAGGGgCuaCCCu----CCGGGGUau -5'
21373 3' -59 NC_004812.1 + 155585 0.68 0.683394
Target:  5'- cGGGCggccgggCCCuCGcgGGGGcgcGGCCCCGg- -3'
miRNA:   3'- -CCUGaa-----GGG-GCuaCCCU---CCGGGGUau -5'
21373 3' -59 NC_004812.1 + 155088 0.7 0.5341
Target:  5'- aGGGCgggCgCCCG--GGGAcGGCCCCGUGa -3'
miRNA:   3'- -CCUGaa-G-GGGCuaCCCU-CCGGGGUAU- -5'
21373 3' -59 NC_004812.1 + 154881 1.09 0.001558
Target:  5'- cGGACUUCCCCGAUGGGAGGCCCCAUAa -3'
miRNA:   3'- -CCUGAAGGGGCUACCCUCCGGGGUAU- -5'
21373 3' -59 NC_004812.1 + 154790 0.69 0.613305
Target:  5'- --cCUcCCCCGAcGGGGcGGCCCCGa- -3'
miRNA:   3'- ccuGAaGGGGCUaCCCU-CCGGGGUau -5'
21373 3' -59 NC_004812.1 + 154740 0.66 0.788331
Target:  5'- cGGGCg--CCCGGgccaauGGAGGCCCCcgGc -3'
miRNA:   3'- -CCUGaagGGGCUac----CCUCCGGGGuaU- -5'
21373 3' -59 NC_004812.1 + 154484 0.69 0.619323
Target:  5'- gGGGCcUCCCCGGacugggacugggacUGGGAGcgcggcccgggccGCCCCGa- -3'
miRNA:   3'- -CCUGaAGGGGCU--------------ACCCUC-------------CGGGGUau -5'
21373 3' -59 NC_004812.1 + 151168 0.71 0.483633
Target:  5'- cGGGCgcgaguccucuuccgCCCCucUGGGGGGCCCCcgGc -3'
miRNA:   3'- -CCUGaa-------------GGGGcuACCCUCCGGGGuaU- -5'
21373 3' -59 NC_004812.1 + 151051 0.71 0.483633
Target:  5'- cGGGCgcgaguccuccuccgCCCCucUGGGGGGCCCCcgGc -3'
miRNA:   3'- -CCUGaa-------------GGGGcuACCCUCCGGGGuaU- -5'
21373 3' -59 NC_004812.1 + 148432 0.76 0.248723
Target:  5'- cGGACcccggCCCgGAcccaUGGGGGGCCCCAg- -3'
miRNA:   3'- -CCUGaa---GGGgCU----ACCCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 140551 0.67 0.722724
Target:  5'- uGGACUucgcccUCCCCGcgGugaucGGGGGCCUCu-- -3'
miRNA:   3'- -CCUGA------AGGGGCuaC-----CCUCCGGGGuau -5'
21373 3' -59 NC_004812.1 + 137948 0.66 0.770134
Target:  5'- cGGcCUUUCCCGgcGcGGcGGCCCCu-- -3'
miRNA:   3'- -CCuGAAGGGGCuaC-CCuCCGGGGuau -5'
21373 3' -59 NC_004812.1 + 137374 0.66 0.770134
Target:  5'- cGGAgUUcgagCCCCG--GGGGGGCgCCGUGg -3'
miRNA:   3'- -CCUgAA----GGGGCuaCCCUCCGgGGUAU- -5'
21373 3' -59 NC_004812.1 + 137238 0.66 0.770134
Target:  5'- uGGACgUCCgCgCGGUGGGcGGGCUCaCGUGc -3'
miRNA:   3'- -CCUGaAGG-G-GCUACCC-UCCGGG-GUAU- -5'
21373 3' -59 NC_004812.1 + 130837 0.68 0.643411
Target:  5'- gGGGCUgacgacggCCUCGAcgcucaagUGGG-GGCCCCGg- -3'
miRNA:   3'- -CCUGAa-------GGGGCU--------ACCCuCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 129029 0.68 0.683394
Target:  5'- cGGCggCCCCGggGGcGGGGCCgCGg- -3'
miRNA:   3'- cCUGaaGGGGCuaCC-CUCCGGgGUau -5'
21373 3' -59 NC_004812.1 + 127639 0.66 0.805986
Target:  5'- ----gUCCCaguccgGGGAGGCCCCGc- -3'
miRNA:   3'- ccugaAGGGgcua--CCCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 126296 0.68 0.683394
Target:  5'- gGGGCcgUUCCUGGUGcccgcGGAGGuCCCCAg- -3'
miRNA:   3'- -CCUGa-AGGGGCUAC-----CCUCC-GGGGUau -5'
21373 3' -59 NC_004812.1 + 125592 0.67 0.751464
Target:  5'- cGGGC-UCCCgGgcGGGcucccGGCCCCGc- -3'
miRNA:   3'- -CCUGaAGGGgCuaCCCu----CCGGGGUau -5'
21373 3' -59 NC_004812.1 + 124187 0.7 0.5341
Target:  5'- aGGGCgggCgCCCG--GGGAcGGCCCCGUGa -3'
miRNA:   3'- -CCUGaa-G-GGGCuaCCCU-CCGGGGUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.