miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21373 3' -59 NC_004812.1 + 78846 0.68 0.683394
Target:  5'- cGGugUcCCCCGAggagcccgGGGAGGgcggaggccgcCCCCAc- -3'
miRNA:   3'- -CCugAaGGGGCUa-------CCCUCC-----------GGGGUau -5'
21373 3' -59 NC_004812.1 + 155585 0.68 0.683394
Target:  5'- cGGGCggccgggCCCuCGcgGGGGcgcGGCCCCGg- -3'
miRNA:   3'- -CCUGaa-----GGG-GCuaCCCU---CCGGGGUau -5'
21373 3' -59 NC_004812.1 + 129029 0.68 0.683394
Target:  5'- cGGCggCCCCGggGGcGGGGCCgCGg- -3'
miRNA:   3'- cCUGaaGGGGCuaCC-CUCCGGgGUau -5'
21373 3' -59 NC_004812.1 + 20592 0.68 0.663452
Target:  5'- cGAUggCCCCGcgGGcGGGGCgCCCGc- -3'
miRNA:   3'- cCUGaaGGGGCuaCC-CUCCG-GGGUau -5'
21373 3' -59 NC_004812.1 + 130837 0.68 0.643411
Target:  5'- gGGGCUgacgacggCCUCGAcgcucaagUGGG-GGCCCCGg- -3'
miRNA:   3'- -CCUGAa-------GGGGCU--------ACCCuCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 154484 0.69 0.619323
Target:  5'- gGGGCcUCCCCGGacugggacugggacUGGGAGcgcggcccgggccGCCCCGa- -3'
miRNA:   3'- -CCUGaAGGGGCU--------------ACCCUC-------------CGGGGUau -5'
21373 3' -59 NC_004812.1 + 28975 0.69 0.619323
Target:  5'- gGGGCcUCCCCGGacugggacugggacUGGGAGcgcggcccgggccGCCCCGa- -3'
miRNA:   3'- -CCUGaAGGGGCU--------------ACCCUC-------------CGGGGUau -5'
21373 3' -59 NC_004812.1 + 60465 0.69 0.613305
Target:  5'- cGACggCCCCGAaGaGGAGGCCggCCAg- -3'
miRNA:   3'- cCUGaaGGGGCUaC-CCUCCGG--GGUau -5'
21373 3' -59 NC_004812.1 + 44716 0.69 0.613305
Target:  5'- -cGCUUUCCCGgcGGG-GGUCCCGg- -3'
miRNA:   3'- ccUGAAGGGGCuaCCCuCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 154790 0.69 0.613305
Target:  5'- --cCUcCCCCGAcGGGGcGGCCCCGa- -3'
miRNA:   3'- ccuGAaGGGGCUaCCCU-CCGGGGUau -5'
21373 3' -59 NC_004812.1 + 123889 0.69 0.613305
Target:  5'- --cCUcCCCCGAcGGGGcGGCCCCGa- -3'
miRNA:   3'- ccuGAaGGGGCUaCCCU-CCGGGGUau -5'
21373 3' -59 NC_004812.1 + 33796 0.69 0.600286
Target:  5'- uGGACUUCaucuggguggaccgCCCGG-GGGAGcccGCCCCGUc -3'
miRNA:   3'- -CCUGAAG--------------GGGCUaCCCUC---CGGGGUAu -5'
21373 3' -59 NC_004812.1 + 2895 0.69 0.600286
Target:  5'- uGGACUUCaucuggguggaccgCCCGG-GGGAGcccGCCCCGUc -3'
miRNA:   3'- -CCUGAAG--------------GGGCUaCCCUC---CGGGGUAu -5'
21373 3' -59 NC_004812.1 + 71911 0.69 0.593291
Target:  5'- cGACgcgucCCCCGGUGcGGGccuGGCCCCGa- -3'
miRNA:   3'- cCUGaa---GGGGCUAC-CCU---CCGGGGUau -5'
21373 3' -59 NC_004812.1 + 95028 0.69 0.593291
Target:  5'- gGGGCUccaccgccggaUCCgCGA-GGGGGGUCCCGg- -3'
miRNA:   3'- -CCUGA-----------AGGgGCUaCCCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 110064 0.7 0.563489
Target:  5'- gGGGCUcgggCCCGAcgGGGAguacggagaGGCCCCGUGg -3'
miRNA:   3'- -CCUGAag--GGGCUa-CCCU---------CCGGGGUAU- -5'
21373 3' -59 NC_004812.1 + 45123 0.7 0.553639
Target:  5'- gGGGCgaugUCCCCaGAgggguccacGGGGGGCCUCAc- -3'
miRNA:   3'- -CCUGa---AGGGG-CUa--------CCCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 106815 0.7 0.543841
Target:  5'- cGACUgggCCCCGc-GGGAGGgCCCGc- -3'
miRNA:   3'- cCUGAa--GGGGCuaCCCUCCgGGGUau -5'
21373 3' -59 NC_004812.1 + 124187 0.7 0.5341
Target:  5'- aGGGCgggCgCCCG--GGGAcGGCCCCGUGa -3'
miRNA:   3'- -CCUGaa-G-GGGCuaCCCU-CCGGGGUAU- -5'
21373 3' -59 NC_004812.1 + 155088 0.7 0.5341
Target:  5'- aGGGCgggCgCCCG--GGGAcGGCCCCGUGa -3'
miRNA:   3'- -CCUGaa-G-GGGCuaCCCU-CCGGGGUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.