miRNA display CGI


Results 21 - 40 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21373 3' -59 NC_004812.1 + 8410 0.66 0.760854
Target:  5'- gGGGCUcggCCCCGGccguaccGGAGGCCgCCGc- -3'
miRNA:   3'- -CCUGAa--GGGGCUac-----CCUCCGG-GGUau -5'
21373 3' -59 NC_004812.1 + 87382 0.66 0.760854
Target:  5'- uGAUcgCCCCccc-GGGGGCCCCGUGg -3'
miRNA:   3'- cCUGaaGGGGcuacCCUCCGGGGUAU- -5'
21373 3' -59 NC_004812.1 + 39311 0.66 0.760854
Target:  5'- gGGGCUcggCCCCGGccguaccGGAGGCCgCCGc- -3'
miRNA:   3'- -CCUGAa--GGGGCUac-----CCUCCGG-GGUau -5'
21373 3' -59 NC_004812.1 + 101896 0.66 0.758985
Target:  5'- cGGGCUagggcgCCCCGAggcgcggcggucGGGccucgGGGCCCCGg- -3'
miRNA:   3'- -CCUGAa-----GGGGCUa-----------CCC-----UCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 83 0.67 0.751464
Target:  5'- cGGGC-UCCCgGgcGGGcucccGGCCCCGc- -3'
miRNA:   3'- -CCUGaAGGGgCuaCCCu----CCGGGGUau -5'
21373 3' -59 NC_004812.1 + 125592 0.67 0.751464
Target:  5'- cGGGC-UCCCgGgcGGGcucccGGCCCCGc- -3'
miRNA:   3'- -CCUGaAGGGgCuaCCCu----CCGGGGUau -5'
21373 3' -59 NC_004812.1 + 79743 0.67 0.751464
Target:  5'- cGGACaUCCCCGggGGGuGGacgugccugCCCGa- -3'
miRNA:   3'- -CCUGaAGGGGCuaCCCuCCg--------GGGUau -5'
21373 3' -59 NC_004812.1 + 46475 0.67 0.751464
Target:  5'- uGGACggCCUCa--GGGAGGgCCCCGa- -3'
miRNA:   3'- -CCUGaaGGGGcuaCCCUCC-GGGGUau -5'
21373 3' -59 NC_004812.1 + 75160 0.67 0.751464
Target:  5'- gGGAggcCCCCGAucgccUGGGgcccuGGGCCCCGg- -3'
miRNA:   3'- -CCUgaaGGGGCU-----ACCC-----UCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 156493 0.67 0.751464
Target:  5'- cGGGC-UCCCgGgcGGGcucccGGCCCCGc- -3'
miRNA:   3'- -CCUGaAGGGgCuaCCCu----CCGGGGUau -5'
21373 3' -59 NC_004812.1 + 94554 0.67 0.741974
Target:  5'- cGGCggCCCUGGUGGcGGGGCUCgGg- -3'
miRNA:   3'- cCUGaaGGGGCUACC-CUCCGGGgUau -5'
21373 3' -59 NC_004812.1 + 24489 0.67 0.732391
Target:  5'- cGGCcgcUCCUgGAcGGGGGGCCCCc-- -3'
miRNA:   3'- cCUGa--AGGGgCUaCCCUCCGGGGuau -5'
21373 3' -59 NC_004812.1 + 50970 0.67 0.722724
Target:  5'- gGGugUaCCCCGGcgUGGuGuuuccGGGCCCCAg- -3'
miRNA:   3'- -CCugAaGGGGCU--ACC-C-----UCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 140551 0.67 0.722724
Target:  5'- uGGACUucgcccUCCCCGcgGugaucGGGGGCCUCu-- -3'
miRNA:   3'- -CCUGA------AGGGGCuaC-----CCUCCGGGGuau -5'
21373 3' -59 NC_004812.1 + 80426 0.67 0.712982
Target:  5'- gGGACccgUCCCCGAgcGGccGGGCCCUg-- -3'
miRNA:   3'- -CCUGa--AGGGGCUacCC--UCCGGGGuau -5'
21373 3' -59 NC_004812.1 + 64715 0.67 0.712982
Target:  5'- cGACUUCCCCGAggccgcGGGcaugcGcGCCCCcgGg -3'
miRNA:   3'- cCUGAAGGGGCUa-----CCCu----C-CGGGGuaU- -5'
21373 3' -59 NC_004812.1 + 76197 0.67 0.707105
Target:  5'- gGGACgggUCCCCGgcGGaGcccucggcgugcagcAGGCCCCcgAa -3'
miRNA:   3'- -CCUGa--AGGGGCuaCC-C---------------UCCGGGGuaU- -5'
21373 3' -59 NC_004812.1 + 126296 0.68 0.683394
Target:  5'- gGGGCcgUUCCUGGUGcccgcGGAGGuCCCCAg- -3'
miRNA:   3'- -CCUGa-AGGGGCUAC-----CCUCC-GGGGUau -5'
21373 3' -59 NC_004812.1 + 3521 0.68 0.683394
Target:  5'- cGGCggCCCCGggGGcGGGGCCgCGg- -3'
miRNA:   3'- cCUGaaGGGGCuaCC-CUCCGGgGUau -5'
21373 3' -59 NC_004812.1 + 30076 0.68 0.683394
Target:  5'- cGGGCggccgggCCCuCGcgGGGGcgcGGCCCCGg- -3'
miRNA:   3'- -CCUGaa-----GGG-GCuaCCCU---CCGGGGUau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.