miRNA display CGI


Results 41 - 60 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 154979 0.66 0.907
Target:  5'- gGCCgCgCGGGACC-CgCGCGCACGgucccucGCGCg -3'
miRNA:   3'- gCGG-G-GCUCUGGuG-GUGUGUGU-------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 96546 0.66 0.901404
Target:  5'- gCGCUCCGcccuGCCGCUGuCGCGCgAGCACa -3'
miRNA:   3'- -GCGGGGCuc--UGGUGGU-GUGUG-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 115693 0.66 0.888306
Target:  5'- aCGCgCCCGAGgcgaGCCcaggGCCAUggggACACGGCAa -3'
miRNA:   3'- -GCG-GGGCUC----UGG----UGGUG----UGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 57077 0.66 0.881419
Target:  5'- gGCUCCGAcACCGCguCGCcguccgucgGCGACGCg -3'
miRNA:   3'- gCGGGGCUcUGGUGguGUG---------UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 12555 0.66 0.907
Target:  5'- gGCCCCcGGcggcgugccGCCGCCGCACcuccuccGCgAACGCg -3'
miRNA:   3'- gCGGGGcUC---------UGGUGGUGUG-------UG-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 1791 0.66 0.894968
Target:  5'- cCGCUCCGcc-CCGCCGCA-GCAugGCg -3'
miRNA:   3'- -GCGGGGCucuGGUGGUGUgUGUugUG- -5'
21374 3' -56.4 NC_004812.1 + 49788 0.66 0.888306
Target:  5'- gGCCCCGcGGGCCcucccgcgggGCC-CAguCGGCGCg -3'
miRNA:   3'- gCGGGGC-UCUGG----------UGGuGUguGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 50582 0.66 0.881419
Target:  5'- gCGCCggcggcaggCCGGGAUCGCCGgGCACAc--- -3'
miRNA:   3'- -GCGG---------GGCUCUGGUGGUgUGUGUugug -5'
21374 3' -56.4 NC_004812.1 + 112921 0.66 0.901404
Target:  5'- uCGCCgCGaAGGCagcgcgGCC-CGCGCAGCGCc -3'
miRNA:   3'- -GCGGgGC-UCUGg-----UGGuGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 108436 0.66 0.881419
Target:  5'- uCGaCgCCGAGGCCACCuu-CGCGAucCACa -3'
miRNA:   3'- -GC-GgGGCUCUGGUGGuguGUGUU--GUG- -5'
21374 3' -56.4 NC_004812.1 + 29997 0.66 0.881419
Target:  5'- uCGCCCuCGAuGGCCAggaCGCGCugGGC-Ca -3'
miRNA:   3'- -GCGGG-GCU-CUGGUg--GUGUGugUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 16487 0.66 0.906387
Target:  5'- uCGCCCCGuacuucgcguccGugCugCGCGCGCccgccaugGGCGCg -3'
miRNA:   3'- -GCGGGGCu-----------CugGugGUGUGUG--------UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 114761 0.66 0.907
Target:  5'- -cUCCCGggacguugguuggGGACCGCCGCggccAUGCAGCACc -3'
miRNA:   3'- gcGGGGC-------------UCUGGUGGUG----UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 137230 0.66 0.901404
Target:  5'- gGCCCUGcuGGACguCCGCGCGguGgGCg -3'
miRNA:   3'- gCGGGGC--UCUGguGGUGUGUguUgUG- -5'
21374 3' -56.4 NC_004812.1 + 114829 0.66 0.881419
Target:  5'- gGCcgCCCGAG-CgGCCGagGCGCGGCGCg -3'
miRNA:   3'- gCG--GGGCUCuGgUGGUg-UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 305 0.66 0.881419
Target:  5'- cCGCgCCCGAGAgCGCgGgcaAC-CAGCACg -3'
miRNA:   3'- -GCG-GGGCUCUgGUGgUg--UGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 79503 0.66 0.8842
Target:  5'- cCGCCCCcgcgGGGGCaacgucauCGCCGCGCagcggaugcgaaacgACGACGCg -3'
miRNA:   3'- -GCGGGG----CUCUG--------GUGGUGUG---------------UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 152851 0.66 0.901404
Target:  5'- uCGUCgCCGGcGCCGCCGCGcCGCugcuGGCGCg -3'
miRNA:   3'- -GCGG-GGCUcUGGUGGUGU-GUG----UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 125623 0.66 0.894968
Target:  5'- gCGCCCCG-GcCCGuCCcucgcgagugcGCGCGCGugGCg -3'
miRNA:   3'- -GCGGGGCuCuGGU-GG-----------UGUGUGUugUG- -5'
21374 3' -56.4 NC_004812.1 + 143334 0.66 0.881419
Target:  5'- cCGCgCCGAGGCCuccGCCGC-CcCGACGu -3'
miRNA:   3'- -GCGgGGCUCUGG---UGGUGuGuGUUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.