miRNA display CGI


Results 21 - 40 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 57077 0.66 0.881419
Target:  5'- gGCUCCGAcACCGCguCGCcguccgucgGCGACGCg -3'
miRNA:   3'- gCGGGGCUcUGGUGguGUG---------UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 71990 0.66 0.894968
Target:  5'- gCGCCCCGGGGCUggGgCGCGguCGucuCGCg -3'
miRNA:   3'- -GCGGGGCUCUGG--UgGUGUguGUu--GUG- -5'
21374 3' -56.4 NC_004812.1 + 31529 0.66 0.881419
Target:  5'- gCGCCCgGAGGCacgcgguCUGCACGCGagcgacgaACGCg -3'
miRNA:   3'- -GCGGGgCUCUGgu-----GGUGUGUGU--------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 50582 0.66 0.881419
Target:  5'- gCGCCggcggcaggCCGGGAUCGCCGgGCACAc--- -3'
miRNA:   3'- -GCGG---------GGCUCUGGUGGUgUGUGUugug -5'
21374 3' -56.4 NC_004812.1 + 117989 0.66 0.894968
Target:  5'- uCGCCCggcgcgGAGACCcccGCCGCGgACucgGCGCg -3'
miRNA:   3'- -GCGGGg-----CUCUGG---UGGUGUgUGu--UGUG- -5'
21374 3' -56.4 NC_004812.1 + 91777 0.66 0.888306
Target:  5'- -aCCCgGAGGaggCugCACAgGCAGCGCa -3'
miRNA:   3'- gcGGGgCUCUg--GugGUGUgUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 127866 0.66 0.888306
Target:  5'- gGCgUCGGGcCCGgCGCGCGCGGCGu -3'
miRNA:   3'- gCGgGGCUCuGGUgGUGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 131503 0.66 0.881419
Target:  5'- aCGCCCCGGaACgCGCgucgGCGCGCGGCGg -3'
miRNA:   3'- -GCGGGGCUcUG-GUGg---UGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 305 0.66 0.881419
Target:  5'- cCGCgCCCGAGAgCGCgGgcaAC-CAGCACg -3'
miRNA:   3'- -GCG-GGGCUCUgGUGgUg--UGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 65035 0.66 0.881419
Target:  5'- gGCCCUGGucGACCugCuguuuUACgACGACGCg -3'
miRNA:   3'- gCGGGGCU--CUGGugGu----GUG-UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 27443 0.66 0.888306
Target:  5'- aGCCCaguagcacgaUGAGGCCGCgCACGuuCAGCGCc -3'
miRNA:   3'- gCGGG----------GCUCUGGUG-GUGUguGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 85397 0.66 0.888306
Target:  5'- gCGCCCgGGGGCCgcguuccucuACCugGCGuucaccuaccguCAGCGCc -3'
miRNA:   3'- -GCGGGgCUCUGG----------UGGugUGU------------GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 38565 0.66 0.8842
Target:  5'- uGCCgCGGGGggaagauccgcggguCCGCCugGCcCGGCGCg -3'
miRNA:   3'- gCGGgGCUCU---------------GGUGGugUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 115693 0.66 0.888306
Target:  5'- aCGCgCCCGAGgcgaGCCcaggGCCAUggggACACGGCAa -3'
miRNA:   3'- -GCG-GGGCUC----UGG----UGGUG----UGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 29997 0.66 0.881419
Target:  5'- uCGCCCuCGAuGGCCAggaCGCGCugGGC-Ca -3'
miRNA:   3'- -GCGGG-GCU-CUGGUg--GUGUGugUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 49788 0.66 0.888306
Target:  5'- gGCCCCGcGGGCCcucccgcgggGCC-CAguCGGCGCg -3'
miRNA:   3'- gCGGGGC-UCUGG----------UGGuGUguGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 112994 0.66 0.888306
Target:  5'- gGCgCCGcGGCCGCCgagGCAgAgGACGCa -3'
miRNA:   3'- gCGgGGCuCUGGUGG---UGUgUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 86297 0.66 0.894968
Target:  5'- uGCCCCGGcauGGCCGaguuCCGCGaucucgACAACGCc -3'
miRNA:   3'- gCGGGGCU---CUGGU----GGUGUg-----UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 48550 0.66 0.881419
Target:  5'- cCGCCgCCGAcuucccccUCACCGCcCGCAGCGCc -3'
miRNA:   3'- -GCGG-GGCUcu------GGUGGUGuGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 108436 0.66 0.881419
Target:  5'- uCGaCgCCGAGGCCACCuu-CGCGAucCACa -3'
miRNA:   3'- -GC-GgGGCUCUGGUGGuguGUGUU--GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.