miRNA display CGI


Results 1 - 20 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 100276 0.65 0.911816
Target:  5'- aCGCCuCCGGGuucucggaggcggcGCgCGCgCGCGCGCuGCGCg -3'
miRNA:   3'- -GCGG-GGCUC--------------UG-GUG-GUGUGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 65035 0.66 0.881419
Target:  5'- gGCCCUGGucGACCugCuguuuUACgACGACGCg -3'
miRNA:   3'- gCGGGGCU--CUGGugGu----GUG-UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 50582 0.66 0.881419
Target:  5'- gCGCCggcggcaggCCGGGAUCGCCGgGCACAc--- -3'
miRNA:   3'- -GCGG---------GGCUCUGGUGGUgUGUGUugug -5'
21374 3' -56.4 NC_004812.1 + 305 0.66 0.881419
Target:  5'- cCGCgCCCGAGAgCGCgGgcaAC-CAGCACg -3'
miRNA:   3'- -GCG-GGGCUCUgGUGgUg--UGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 114829 0.66 0.881419
Target:  5'- gGCcgCCCGAG-CgGCCGagGCGCGGCGCg -3'
miRNA:   3'- gCG--GGGCUCuGgUGGUg-UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 131503 0.66 0.881419
Target:  5'- aCGCCCCGGaACgCGCgucgGCGCGCGGCGg -3'
miRNA:   3'- -GCGGGGCUcUG-GUGg---UGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 3628 0.66 0.881419
Target:  5'- cCGCCCCGgcgcucAGGCCcagcCCAgGCcCGGCGCc -3'
miRNA:   3'- -GCGGGGC------UCUGGu---GGUgUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 143334 0.66 0.881419
Target:  5'- cCGCgCCGAGGCCuccGCCGC-CcCGACGu -3'
miRNA:   3'- -GCGgGGCUCUGG---UGGUGuGuGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 29997 0.66 0.881419
Target:  5'- uCGCCCuCGAuGGCCAggaCGCGCugGGC-Ca -3'
miRNA:   3'- -GCGGG-GCU-CUGGUg--GUGUGugUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 75477 0.66 0.881419
Target:  5'- uGCUCCGcGGCCGCgGCcagguccaGCGGCACg -3'
miRNA:   3'- gCGGGGCuCUGGUGgUGug------UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 20583 0.66 0.881419
Target:  5'- cCGCCUCGccgauGGCC-CCGCGgGCGGgGCg -3'
miRNA:   3'- -GCGGGGCu----CUGGuGGUGUgUGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 57077 0.66 0.881419
Target:  5'- gGCUCCGAcACCGCguCGCcguccgucgGCGACGCg -3'
miRNA:   3'- gCGGGGCUcUGGUGguGUG---------UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 29878 0.66 0.881419
Target:  5'- gCGCCCCGcugucccccGACCACCucgugcagguggGC-CGCGAUGCg -3'
miRNA:   3'- -GCGGGGCu--------CUGGUGG------------UGuGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 136271 0.66 0.881419
Target:  5'- gGgCCCGuGcCCGCCcuGCACuCGACGCg -3'
miRNA:   3'- gCgGGGCuCuGGUGG--UGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 42294 0.66 0.881419
Target:  5'- gCGCCCCGcguccguuccuGGgCGCCGC-CAUGGCGCu -3'
miRNA:   3'- -GCGGGGCu----------CUgGUGGUGuGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 31529 0.66 0.881419
Target:  5'- gCGCCCgGAGGCacgcgguCUGCACGCGagcgacgaACGCg -3'
miRNA:   3'- -GCGGGgCUCUGgu-----GGUGUGUGU--------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 106025 0.66 0.881419
Target:  5'- gCGaUCCUGAucGCCGCCAacgGCGCGACGCa -3'
miRNA:   3'- -GC-GGGGCUc-UGGUGGUg--UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 108436 0.66 0.881419
Target:  5'- uCGaCgCCGAGGCCACCuu-CGCGAucCACa -3'
miRNA:   3'- -GC-GgGGCUCUGGUGGuguGUGUU--GUG- -5'
21374 3' -56.4 NC_004812.1 + 66602 0.66 0.881419
Target:  5'- cCGgCCCGcGGGCCGCUcCACGCccaggccgucGGCACg -3'
miRNA:   3'- -GCgGGGC-UCUGGUGGuGUGUG----------UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 73302 0.66 0.881419
Target:  5'- aGCCCuCGGGGaacaugCACgAC-CACAGCGCg -3'
miRNA:   3'- gCGGG-GCUCUg-----GUGgUGuGUGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.