miRNA display CGI


Results 1 - 20 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 100419 0.77 0.325767
Target:  5'- gCGCCgCGAGGCCGCC-CGCACGucCGCc -3'
miRNA:   3'- -GCGGgGCUCUGGUGGuGUGUGUu-GUG- -5'
21374 3' -56.4 NC_004812.1 + 63475 0.79 0.270866
Target:  5'- gGCCCCGAGuuCGCCACGggcUACAACAUc -3'
miRNA:   3'- gCGGGGCUCugGUGGUGU---GUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 18086 0.78 0.2773
Target:  5'- aGCCgCCGuccGGGCCGCCGCACACGcggacgACGCg -3'
miRNA:   3'- gCGG-GGC---UCUGGUGGUGUGUGU------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 67010 0.78 0.283856
Target:  5'- gGCCUCGGGGCCgGCCGCcCGCAGCAg -3'
miRNA:   3'- gCGGGGCUCUGG-UGGUGuGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 107863 0.78 0.283856
Target:  5'- cCGCCuCCGAGggcggaGCCGCCACGCGCAcCAUc -3'
miRNA:   3'- -GCGG-GGCUC------UGGUGGUGUGUGUuGUG- -5'
21374 3' -56.4 NC_004812.1 + 107935 0.78 0.296649
Target:  5'- gCGCCCCGAGgaggccgGCCAUCGCGCgGCGAgGCg -3'
miRNA:   3'- -GCGGGGCUC-------UGGUGGUGUG-UGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 33603 0.78 0.297334
Target:  5'- cCGCCCCucGACCACCACGaACGGCGg -3'
miRNA:   3'- -GCGGGGcuCUGGUGGUGUgUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 116140 0.78 0.304258
Target:  5'- gGCCCCGAGGgCggGCCACAgggcCGCGGCGCg -3'
miRNA:   3'- gCGGGGCUCUgG--UGGUGU----GUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 51434 0.77 0.318474
Target:  5'- cCGCCCCGccACCAgCCGCACGCGACc- -3'
miRNA:   3'- -GCGGGGCucUGGU-GGUGUGUGUUGug -5'
21374 3' -56.4 NC_004812.1 + 145698 0.79 0.270866
Target:  5'- uCGUCCCccGACCGCCACAC-CGGCGCu -3'
miRNA:   3'- -GCGGGGcuCUGGUGGUGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 114265 0.79 0.252283
Target:  5'- cCGCCCCGaAGAcCCGCgGCGC-CGACACa -3'
miRNA:   3'- -GCGGGGC-UCU-GGUGgUGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 153196 0.8 0.229153
Target:  5'- uGCCgCCGGGGCCcaGCCACACGcCGGCGCc -3'
miRNA:   3'- gCGG-GGCUCUGG--UGGUGUGU-GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 55798 0.87 0.08692
Target:  5'- cCGcCCCCGAGACgCGCCAgCACGCGGCGCa -3'
miRNA:   3'- -GC-GGGGCUCUG-GUGGU-GUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 118076 0.83 0.14259
Target:  5'- gCGCCCCGAccccGGCCGCCGCGCGucucCGGCGCg -3'
miRNA:   3'- -GCGGGGCU----CUGGUGGUGUGU----GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 100991 0.82 0.170326
Target:  5'- gCGCCCCagaaAGGCCGCCuCGCGCGGCGCg -3'
miRNA:   3'- -GCGGGGc---UCUGGUGGuGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 154125 0.81 0.183628
Target:  5'- cCGCCCgCGAGGCCGCCGcCGC-CGGCGCc -3'
miRNA:   3'- -GCGGG-GCUCUGGUGGU-GUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 69426 0.81 0.193
Target:  5'- gGCCCgGAGgacGCCgGCCGCACGCGGCGCa -3'
miRNA:   3'- gCGGGgCUC---UGG-UGGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 396 0.81 0.206314
Target:  5'- gCGCCCCGccccccacgcgcgcAGGCCuuCCGCGCGCGGCGCu -3'
miRNA:   3'- -GCGGGGC--------------UCUGGu-GGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 73439 0.81 0.207841
Target:  5'- aGCUCCGGGGCCGCgCGC-CACGGCGCc -3'
miRNA:   3'- gCGGGGCUCUGGUG-GUGuGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 101927 0.8 0.229153
Target:  5'- gGCCUCGGGGCC-CCggACGCGCGGCGCg -3'
miRNA:   3'- gCGGGGCUCUGGuGG--UGUGUGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.