miRNA display CGI


Results 1 - 20 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 114 0.66 0.894968
Target:  5'- gCGCCCCG-GcCCGuCCcucgcgagugcGCGCGCGugGCg -3'
miRNA:   3'- -GCGGGGCuCuGGU-GG-----------UGUGUGUugUG- -5'
21374 3' -56.4 NC_004812.1 + 305 0.66 0.881419
Target:  5'- cCGCgCCCGAGAgCGCgGgcaAC-CAGCACg -3'
miRNA:   3'- -GCG-GGGCUCUgGUGgUg--UGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 396 0.81 0.206314
Target:  5'- gCGCCCCGccccccacgcgcgcAGGCCuuCCGCGCGCGGCGCu -3'
miRNA:   3'- -GCGGGGC--------------UCUGGu-GGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 450 0.69 0.774158
Target:  5'- cCGCCgCGAGcccggGCCGCCGgCGCGCcugcguGCGCa -3'
miRNA:   3'- -GCGGgGCUC-----UGGUGGU-GUGUGu-----UGUG- -5'
21374 3' -56.4 NC_004812.1 + 532 0.74 0.48669
Target:  5'- cCGCCCCGGGAgCCggaaggcgGCgACGCGCcGCGCg -3'
miRNA:   3'- -GCGGGGCUCU-GG--------UGgUGUGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 598 0.68 0.801451
Target:  5'- gGCCCCGGGcguccccuCCcCCGCGcCGCgAGCACg -3'
miRNA:   3'- gCGGGGCUCu-------GGuGGUGU-GUG-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 639 0.67 0.843803
Target:  5'- aGCCgggaUCGAGugCGCC-CAC-CAACGCc -3'
miRNA:   3'- gCGG----GGCUCugGUGGuGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 733 0.66 0.880015
Target:  5'- cCGCCCCuccccucccCCGCCGCGCGCGccuCGCc -3'
miRNA:   3'- -GCGGGGcucu-----GGUGGUGUGUGUu--GUG- -5'
21374 3' -56.4 NC_004812.1 + 781 0.66 0.901404
Target:  5'- gGCCCCGcgggagauGGGCCGCCGCcccCGCcGC-Cg -3'
miRNA:   3'- gCGGGGC--------UCUGGUGGUGu--GUGuUGuG- -5'
21374 3' -56.4 NC_004812.1 + 929 0.72 0.574921
Target:  5'- gCGCgCCGAGcCCGCCGCGCGCu---- -3'
miRNA:   3'- -GCGgGGCUCuGGUGGUGUGUGuugug -5'
21374 3' -56.4 NC_004812.1 + 1023 0.67 0.866993
Target:  5'- gCGCCCCcgcGAGggcccgGCCGCC-CGCGC-GCGCc -3'
miRNA:   3'- -GCGGGG---CUC------UGGUGGuGUGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 1188 0.67 0.874314
Target:  5'- cCGUCgCCGucGCCGCCGC-CACcACGCc -3'
miRNA:   3'- -GCGG-GGCucUGGUGGUGuGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 1415 0.67 0.862501
Target:  5'- gGCCCCGAcGGCgGCCGCGgggaggggccggggcCGCGagggccggGCACg -3'
miRNA:   3'- gCGGGGCU-CUGgUGGUGU---------------GUGU--------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 1509 0.67 0.874314
Target:  5'- cCGgCCCGc-GCCGCCGCGCGagGGCAUg -3'
miRNA:   3'- -GCgGGGCucUGGUGGUGUGUg-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 1604 0.66 0.894968
Target:  5'- cCGCCuCCGGGcGCC-CCGCGCGagggaccguGCGCg -3'
miRNA:   3'- -GCGG-GGCUC-UGGuGGUGUGUgu-------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 1791 0.66 0.894968
Target:  5'- cCGCUCCGcc-CCGCCGCA-GCAugGCg -3'
miRNA:   3'- -GCGGGGCucuGGUGGUGUgUGUugUG- -5'
21374 3' -56.4 NC_004812.1 + 1887 0.71 0.666272
Target:  5'- gGCgCCCG-GGCC-CCGCcCGCGGCACc -3'
miRNA:   3'- gCG-GGGCuCUGGuGGUGuGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 2223 0.73 0.525235
Target:  5'- gCGgCCCGcGGCCcaGCgCACGCGCGGCGCg -3'
miRNA:   3'- -GCgGGGCuCUGG--UG-GUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 2261 0.72 0.585004
Target:  5'- gGUCCgCGucGGCguCCGCGCGCAGCACg -3'
miRNA:   3'- gCGGG-GCu-CUGguGGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 2358 0.66 0.888306
Target:  5'- gGCgUCGGGcCCGgCGCGCGCGGCGu -3'
miRNA:   3'- gCGgGGCUCuGGUgGUGUGUGUUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.