miRNA display CGI


Results 1 - 20 of 796 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 118812 1.1 0.00229
Target:  5'- gCGCCCCGAGACCACCACACACAACACg -3'
miRNA:   3'- -GCGGGGCUCUGGUGGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 149713 1.1 0.00229
Target:  5'- gCGCCCCGAGACCACCACACACAACACg -3'
miRNA:   3'- -GCGGGGCUCUGGUGGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 55798 0.87 0.08692
Target:  5'- cCGcCCCCGAGACgCGCCAgCACGCGGCGCa -3'
miRNA:   3'- -GC-GGGGCUCUG-GUGGU-GUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 132793 0.86 0.099158
Target:  5'- gGCCCCGGGucGCCGCCcCGCGCGGCGCg -3'
miRNA:   3'- gCGGGGCUC--UGGUGGuGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 58185 0.84 0.128656
Target:  5'- cCGCCCCGcGGCCGCCGCACcgaGACGCu -3'
miRNA:   3'- -GCGGGGCuCUGGUGGUGUGug-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 11289 0.83 0.138982
Target:  5'- aCGCCCaCGAGGCgCGCCGCGCGgGGCGCc -3'
miRNA:   3'- -GCGGG-GCUCUG-GUGGUGUGUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 148977 0.83 0.14259
Target:  5'- gCGCCCCGAccccGGCCGCCGCGCGucucCGGCGCg -3'
miRNA:   3'- -GCGGGGCU----CUGGUGGUGUGU----GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 12441 0.83 0.14259
Target:  5'- uCGUCUCGAuGGCCGCCGCGCACAcACACg -3'
miRNA:   3'- -GCGGGGCU-CUGGUGGUGUGUGU-UGUG- -5'
21374 3' -56.4 NC_004812.1 + 118076 0.83 0.14259
Target:  5'- gCGCCCCGAccccGGCCGCCGCGCGucucCGGCGCg -3'
miRNA:   3'- -GCGGGGCU----CUGGUGGUGUGU----GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 57207 0.82 0.161942
Target:  5'- gCGCCCCGAcGACCccaGCCGC-CGCAGCGCc -3'
miRNA:   3'- -GCGGGGCU-CUGG---UGGUGuGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 100991 0.82 0.170326
Target:  5'- gCGCCCCagaaAGGCCGCCuCGCGCGGCGCg -3'
miRNA:   3'- -GCGGGGc---UCUGGUGGuGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 154125 0.81 0.183628
Target:  5'- cCGCCCgCGAGGCCGCCGcCGC-CGGCGCc -3'
miRNA:   3'- -GCGGG-GCUCUGGUGGU-GUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 28617 0.81 0.183628
Target:  5'- cCGCCCgCGAGGCCGCCGcCGC-CGGCGCc -3'
miRNA:   3'- -GCGGG-GCUCUGGUGGU-GUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 69426 0.81 0.193
Target:  5'- gGCCCgGAGgacGCCgGCCGCACGCGGCGCa -3'
miRNA:   3'- gCGGGgCUC---UGG-UGGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 9108 0.81 0.202787
Target:  5'- gCGCCUCGGGGCCACCGgACccccGCGGCGCc -3'
miRNA:   3'- -GCGGGGCUCUGGUGGUgUG----UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 31297 0.81 0.206314
Target:  5'- gCGCCCCGccccccacgcgcgcAGGCCuuCCGCGCGCGGCGCu -3'
miRNA:   3'- -GCGGGGC--------------UCUGGu-GGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 396 0.81 0.206314
Target:  5'- gCGCCCCGccccccacgcgcgcAGGCCuuCCGCGCGCGGCGCu -3'
miRNA:   3'- -GCGGGGC--------------UCUGGu-GGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 73439 0.81 0.207841
Target:  5'- aGCUCCGGGGCCGCgCGC-CACGGCGCc -3'
miRNA:   3'- gCGGGGCUCUGGUG-GUGuGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 153196 0.8 0.229153
Target:  5'- uGCCgCCGGGGCCcaGCCACACGcCGGCGCc -3'
miRNA:   3'- gCGG-GGCUCUGG--UGGUGUGU-GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 101927 0.8 0.229153
Target:  5'- gGCCUCGGGGCC-CCggACGCGCGGCGCg -3'
miRNA:   3'- gCGGGGCUCUGGuGG--UGUGUGUUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.