miRNA display CGI


Results 21 - 40 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 2583 0.73 0.554884
Target:  5'- cCGCCuCCGAcGCCGCCGcCGCcgACGGCACc -3'
miRNA:   3'- -GCGG-GGCUcUGGUGGU-GUG--UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 2633 0.76 0.372101
Target:  5'- cCGCCCCgcGAGACCugCGCcgucuGCACGgaGCGCa -3'
miRNA:   3'- -GCGGGG--CUCUGGugGUG-----UGUGU--UGUG- -5'
21374 3' -56.4 NC_004812.1 + 2715 0.75 0.431555
Target:  5'- gCGgCCgGAGGCCAgCACGgCGCGGCGCa -3'
miRNA:   3'- -GCgGGgCUCUGGUgGUGU-GUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 2829 0.74 0.48669
Target:  5'- -uCCCCGuggucaacGACCcCCGCACGCGGCGCg -3'
miRNA:   3'- gcGGGGCu-------CUGGuGGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 3114 0.69 0.764798
Target:  5'- gCGCCgCCGAGcuccUCGCCGgGCAgCGGCGCg -3'
miRNA:   3'- -GCGG-GGCUCu---GGUGGUgUGU-GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 3285 0.68 0.818904
Target:  5'- aCGCcgCCCGGGcCCACCGCGCGuc-CACc -3'
miRNA:   3'- -GCG--GGGCUCuGGUGGUGUGUguuGUG- -5'
21374 3' -56.4 NC_004812.1 + 3334 0.75 0.431555
Target:  5'- gGCCCgaGGGGCCGCCGCGCcCcGCGCc -3'
miRNA:   3'- gCGGGg-CUCUGGUGGUGUGuGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 3426 0.67 0.866993
Target:  5'- gGCCCCGGcGGCaCGCgGCGC-CAGC-Cg -3'
miRNA:   3'- gCGGGGCU-CUG-GUGgUGUGuGUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 3480 0.7 0.706503
Target:  5'- cCGCCgCCGAGcCCcCCGCGCccgcccccgggGCGGCGCc -3'
miRNA:   3'- -GCGG-GGCUCuGGuGGUGUG-----------UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 3525 0.68 0.818904
Target:  5'- gGCCCCGGGGgCGggGC-CGCGGCGCc -3'
miRNA:   3'- gCGGGGCUCUgGUggUGuGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 3628 0.66 0.881419
Target:  5'- cCGCCCCGgcgcucAGGCCcagcCCAgGCcCGGCGCc -3'
miRNA:   3'- -GCGGGGC------UCUGGu---GGUgUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 3812 0.68 0.827382
Target:  5'- gGCCUCGGcGCCGCCG---GCGACGCg -3'
miRNA:   3'- gCGGGGCUcUGGUGGUgugUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 3900 0.76 0.364075
Target:  5'- cCGCCuCCGAGGCCGCC-CcCGCcACGCg -3'
miRNA:   3'- -GCGG-GGCUCUGGUGGuGuGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 3971 0.69 0.764798
Target:  5'- gCGCCCCc---CCGCCGCGCGCcggccgGGCACc -3'
miRNA:   3'- -GCGGGGcucuGGUGGUGUGUG------UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 3984 0.71 0.666272
Target:  5'- uCGCCgCCGAGcccucgGCCAgCGCcuccaGCACGGCGCg -3'
miRNA:   3'- -GCGG-GGCUC------UGGUgGUG-----UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 4700 0.71 0.645958
Target:  5'- gCGCCCCcGGcCCGCCGCGCgaggACGGgGCg -3'
miRNA:   3'- -GCGGGGcUCuGGUGGUGUG----UGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 4706 0.68 0.780637
Target:  5'- aGCCCCGggcggcugucgcccAGGCCGCCGuagaGCAC-GCGCc -3'
miRNA:   3'- gCGGGGC--------------UCUGGUGGUg---UGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 5234 0.73 0.554884
Target:  5'- gGCuCCCGGGAgaagcacaagacCCACaCACGCGCGGCAg -3'
miRNA:   3'- gCG-GGGCUCU------------GGUG-GUGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 5256 0.66 0.894968
Target:  5'- gCGCgCCGAGucgGCCGCCGCgGCcCcGCGCu -3'
miRNA:   3'- -GCGgGGCUC---UGGUGGUG-UGuGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 5307 0.75 0.431555
Target:  5'- aG-CCCGAGAcCCACaCACGCGCGGCAg -3'
miRNA:   3'- gCgGGGCUCU-GGUG-GUGUGUGUUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.