miRNA display CGI


Results 41 - 60 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 52593 0.77 0.340723
Target:  5'- gGCCCCGAGGCCguacGCCACGgGCcgccucagccaGGCGCa -3'
miRNA:   3'- gCGGGGCUCUGG----UGGUGUgUG-----------UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 84414 0.76 0.356169
Target:  5'- aCGCCCCGcgacgacccgGGGCCcccgGCCGCACcCAGCACc -3'
miRNA:   3'- -GCGGGGC----------UCUGG----UGGUGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 100331 0.76 0.356169
Target:  5'- gGCCCuCGAGcggGCCGCCGCGgGCGAgGCg -3'
miRNA:   3'- gCGGG-GCUC---UGGUGGUGUgUGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 14464 0.76 0.356169
Target:  5'- uCGCCCCGG--UCACCACGCAgucCAGCACc -3'
miRNA:   3'- -GCGGGGCUcuGGUGGUGUGU---GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 10226 0.76 0.356169
Target:  5'- aGCCCCcAGGCCGCCugAgAuCAGCGCg -3'
miRNA:   3'- gCGGGGcUCUGGUGGugUgU-GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 46565 0.76 0.356169
Target:  5'- aGCCCCGGG-UCGCCGCGCACcGCcCg -3'
miRNA:   3'- gCGGGGCUCuGGUGGUGUGUGuUGuG- -5'
21374 3' -56.4 NC_004812.1 + 60098 0.76 0.356954
Target:  5'- aGCCCCGGGugcccggggcaggguCCGCCGCugGCGGCGg -3'
miRNA:   3'- gCGGGGCUCu--------------GGUGGUGugUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 62259 0.76 0.363279
Target:  5'- gCGCgCCGGGGCCgcGCCGCGCGCGgagacccACGCg -3'
miRNA:   3'- -GCGgGGCUCUGG--UGGUGUGUGU-------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 3900 0.76 0.364075
Target:  5'- cCGCCuCCGAGGCCGCC-CcCGCcACGCg -3'
miRNA:   3'- -GCGG-GGCUCUGGUGGuGuGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 34801 0.76 0.364075
Target:  5'- cCGCCuCCGAGGCCGCC-CcCGCcACGCg -3'
miRNA:   3'- -GCGG-GGCUCUGGUGGuGuGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 25867 0.76 0.372101
Target:  5'- gCGCCCCGAcGGCCGCgAgGC-CGACGCc -3'
miRNA:   3'- -GCGGGGCU-CUGGUGgUgUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 151375 0.76 0.372101
Target:  5'- gCGCCCCGAcGGCCGCgAgGC-CGACGCc -3'
miRNA:   3'- -GCGGGGCU-CUGGUGgUgUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 2633 0.76 0.372101
Target:  5'- cCGCCCCgcGAGACCugCGCcgucuGCACGgaGCGCa -3'
miRNA:   3'- -GCGGGG--CUCUGGugGUG-----UGUGU--UGUG- -5'
21374 3' -56.4 NC_004812.1 + 33534 0.76 0.372101
Target:  5'- cCGCCCCgcGAGACCugCGCcgucuGCACGgaGCGCa -3'
miRNA:   3'- -GCGGGG--CUCUGGugGUG-----UGUGU--UGUG- -5'
21374 3' -56.4 NC_004812.1 + 121864 0.76 0.372101
Target:  5'- gGCCCCGGGGCCGCCccaGgACGGCGa -3'
miRNA:   3'- gCGGGGCUCUGGUGGug-UgUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 81657 0.76 0.372101
Target:  5'- gCGCaCCCGcuGACCGCgGCGCGCGACGg -3'
miRNA:   3'- -GCG-GGGCu-CUGGUGgUGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 19820 0.76 0.372101
Target:  5'- gCGCUCCaGGGCCACCAgCGCGC-ACGCg -3'
miRNA:   3'- -GCGGGGcUCUGGUGGU-GUGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 126240 0.76 0.372101
Target:  5'- aGCCCCGAcccGGCCGCCGagcggcucgACGCGACGCc -3'
miRNA:   3'- gCGGGGCU---CUGGUGGUg--------UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 135392 0.76 0.380247
Target:  5'- uCGCCgCGAGACUucuGCCGCuuucuGCGCGGCGCg -3'
miRNA:   3'- -GCGGgGCUCUGG---UGGUG-----UGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 61114 0.76 0.38768
Target:  5'- gCGCCCCGcGGCgCGCCggcgcccGCGCACAACAa -3'
miRNA:   3'- -GCGGGGCuCUG-GUGG-------UGUGUGUUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.