miRNA display CGI


Results 41 - 60 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 781 0.66 0.901404
Target:  5'- gGCCCCGcgggagauGGGCCGCCGCcccCGCcGC-Cg -3'
miRNA:   3'- gCGGGGC--------UCUGGUGGUGu--GUGuUGuG- -5'
21374 3' -56.4 NC_004812.1 + 137230 0.66 0.901404
Target:  5'- gGCCCUGcuGGACguCCGCGCGguGgGCg -3'
miRNA:   3'- gCGGGGC--UCUGguGGUGUGUguUgUG- -5'
21374 3' -56.4 NC_004812.1 + 152851 0.66 0.901404
Target:  5'- uCGUCgCCGGcGCCGCCGCGcCGCugcuGGCGCg -3'
miRNA:   3'- -GCGG-GGCUcUGGUGGUGU-GUG----UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 96546 0.66 0.901404
Target:  5'- gCGCUCCGcccuGCCGCUGuCGCGCgAGCACa -3'
miRNA:   3'- -GCGGGGCuc--UGGUGGU-GUGUG-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 153037 0.66 0.901404
Target:  5'- cCGCCgCCGccGCCGCCugccCGC-CGGCGCg -3'
miRNA:   3'- -GCGG-GGCucUGGUGGu---GUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 53383 0.66 0.900771
Target:  5'- aCGUCCgCGAGcGCCugaaccuGCCGCucgucCGCAGCGCg -3'
miRNA:   3'- -GCGGG-GCUC-UGG-------UGGUGu----GUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 89859 0.66 0.900771
Target:  5'- uCGUgCgCGAGGCCGgCGCGCugcuccgACGGCACu -3'
miRNA:   3'- -GCGgG-GCUCUGGUgGUGUG-------UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 45023 0.66 0.900136
Target:  5'- gCGCCaccaucuugugggCCGGGcUCACCACGCcgaacauGCAGCGCc -3'
miRNA:   3'- -GCGG-------------GGCUCuGGUGGUGUG-------UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 17309 0.66 0.894968
Target:  5'- cCGCCCUc-GGCCGCCGCAC-Cu-CGCc -3'
miRNA:   3'- -GCGGGGcuCUGGUGGUGUGuGuuGUG- -5'
21374 3' -56.4 NC_004812.1 + 117989 0.66 0.894968
Target:  5'- uCGCCCggcgcgGAGACCcccGCCGCGgACucgGCGCg -3'
miRNA:   3'- -GCGGGg-----CUCUGG---UGGUGUgUGu--UGUG- -5'
21374 3' -56.4 NC_004812.1 + 96359 0.66 0.894968
Target:  5'- gCGCCCCGAcgguGCUGCCGCGgccCACGAUc- -3'
miRNA:   3'- -GCGGGGCUc---UGGUGGUGU---GUGUUGug -5'
21374 3' -56.4 NC_004812.1 + 86297 0.66 0.894968
Target:  5'- uGCCCCGGcauGGCCGaguuCCGCGaucucgACAACGCc -3'
miRNA:   3'- gCGGGGCU---CUGGU----GGUGUg-----UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 1604 0.66 0.894968
Target:  5'- cCGCCuCCGGGcGCC-CCGCGCGagggaccguGCGCg -3'
miRNA:   3'- -GCGG-GGCUC-UGGuGGUGUGUgu-------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 5256 0.66 0.894968
Target:  5'- gCGCgCCGAGucgGCCGCCGCgGCcCcGCGCu -3'
miRNA:   3'- -GCGgGGCUC---UGGUGGUG-UGuGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 54741 0.66 0.894968
Target:  5'- gCGcCCCCGGGGgUACCugggggcgguggACACgGCGGCGCu -3'
miRNA:   3'- -GC-GGGGCUCUgGUGG------------UGUG-UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 114 0.66 0.894968
Target:  5'- gCGCCCCG-GcCCGuCCcucgcgagugcGCGCGCGugGCg -3'
miRNA:   3'- -GCGGGGCuCuGGU-GG-----------UGUGUGUugUG- -5'
21374 3' -56.4 NC_004812.1 + 53434 0.66 0.894968
Target:  5'- aG-CCCGGGGCCG-CGCugACGGCGg -3'
miRNA:   3'- gCgGGGCUCUGGUgGUGugUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 145840 0.66 0.894968
Target:  5'- aCGCCCgGGGACUgucuuGCgGCGCG-AACGCc -3'
miRNA:   3'- -GCGGGgCUCUGG-----UGgUGUGUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 67343 0.66 0.894968
Target:  5'- cCGCgCCGcGGCCugcgcgucCCACGCcuGCGACACc -3'
miRNA:   3'- -GCGgGGCuCUGGu-------GGUGUG--UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 112811 0.66 0.894968
Target:  5'- uGUCggUCGAGGCCAUgGCGCAgaaGACGCa -3'
miRNA:   3'- gCGG--GGCUCUGGUGgUGUGUg--UUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.