miRNA display CGI


Results 21 - 40 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 12555 0.66 0.907
Target:  5'- gGCCCCcGGcggcgugccGCCGCCGCACcuccuccGCgAACGCg -3'
miRNA:   3'- gCGGGGcUC---------UGGUGGUGUG-------UG-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 16487 0.66 0.906387
Target:  5'- uCGCCCCGuacuucgcguccGugCugCGCGCGCccgccaugGGCGCg -3'
miRNA:   3'- -GCGGGGCu-----------CugGugGUGUGUG--------UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 101343 0.66 0.905773
Target:  5'- uCGCCgcagaggcgggcguUCGcGGCCACC-CGCACGACGg -3'
miRNA:   3'- -GCGG--------------GGCuCUGGUGGuGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 83227 0.66 0.901405
Target:  5'- gGCCUCGGuGGCCcCCggGCGCugGugGCg -3'
miRNA:   3'- gCGGGGCU-CUGGuGG--UGUGugUugUG- -5'
21374 3' -56.4 NC_004812.1 + 59456 0.66 0.901405
Target:  5'- aCGaCCCCGGcGAUCaACCACGCGaccgcggagaGGCGCg -3'
miRNA:   3'- -GC-GGGGCU-CUGG-UGGUGUGUg---------UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 125823 0.66 0.901405
Target:  5'- uCGgCCCGcGGCC-CCGCAgGCGGgGCc -3'
miRNA:   3'- -GCgGGGCuCUGGuGGUGUgUGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 13145 0.66 0.901405
Target:  5'- uGCCgCCGGcGACaGCgACGCGCGAgACa -3'
miRNA:   3'- gCGG-GGCU-CUGgUGgUGUGUGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 31682 0.66 0.901405
Target:  5'- gGCCCCGcgggagauGGGCCGCCGCcccCGCcGC-Cg -3'
miRNA:   3'- gCGGGGC--------UCUGGUGGUGu--GUGuUGuG- -5'
21374 3' -56.4 NC_004812.1 + 132094 0.66 0.901405
Target:  5'- aGCCCCGA--CCGCaGCcccCGCGGCGCg -3'
miRNA:   3'- gCGGGGCUcuGGUGgUGu--GUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 125718 0.66 0.901405
Target:  5'- uGCCCgCGGGGCgCgggGCCGCGCGCugaGCc -3'
miRNA:   3'- gCGGG-GCUCUG-G---UGGUGUGUGuugUG- -5'
21374 3' -56.4 NC_004812.1 + 115654 0.66 0.901405
Target:  5'- cCGCCCCuaGGGaACCACCgauGCcCGgGACGCc -3'
miRNA:   3'- -GCGGGG--CUC-UGGUGG---UGuGUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 64127 0.66 0.901405
Target:  5'- cCGCCUCGAcGGCCaaGCCGgACAuUAugGCg -3'
miRNA:   3'- -GCGGGGCU-CUGG--UGGUgUGU-GUugUG- -5'
21374 3' -56.4 NC_004812.1 + 82568 0.66 0.901405
Target:  5'- cCGCCCgaGGGGCUcgauuCCACGCA-GACGCu -3'
miRNA:   3'- -GCGGGg-CUCUGGu----GGUGUGUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 87036 0.66 0.901405
Target:  5'- gCGCUCgGAGGCgGCUGCGgCGCGGCcgGCg -3'
miRNA:   3'- -GCGGGgCUCUGgUGGUGU-GUGUUG--UG- -5'
21374 3' -56.4 NC_004812.1 + 27529 0.66 0.901405
Target:  5'- cCGCCgCCGccGCCGCCugccCGC-CGGCGCg -3'
miRNA:   3'- -GCGG-GGCucUGGUGGu---GUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 27343 0.66 0.901405
Target:  5'- uCGUCgCCGGcGCCGCCGCGcCGCugcuGGCGCg -3'
miRNA:   3'- -GCGG-GGCUcUGGUGGUGU-GUG----UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 112318 0.66 0.901405
Target:  5'- gCGCCUCGGGcggcugGCCGCggaggcgguCGCGCGCGACcaGCg -3'
miRNA:   3'- -GCGGGGCUC------UGGUG---------GUGUGUGUUG--UG- -5'
21374 3' -56.4 NC_004812.1 + 152851 0.66 0.901404
Target:  5'- uCGUCgCCGGcGCCGCCGCGcCGCugcuGGCGCg -3'
miRNA:   3'- -GCGG-GGCUcUGGUGGUGU-GUG----UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 87572 0.66 0.901404
Target:  5'- uGCCCuCGAcGcCCGCCAUGCugGGCc- -3'
miRNA:   3'- gCGGG-GCU-CuGGUGGUGUGugUUGug -5'
21374 3' -56.4 NC_004812.1 + 153037 0.66 0.901404
Target:  5'- cCGCCgCCGccGCCGCCugccCGC-CGGCGCg -3'
miRNA:   3'- -GCGG-GGCucUGGUGGu---GUGuGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.