miRNA display CGI


Results 41 - 60 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 5416 0.67 0.835684
Target:  5'- gGCCCCGcGGACgACgGCGgggACAGCGCc -3'
miRNA:   3'- gCGGGGC-UCUGgUGgUGUg--UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 5994 0.66 0.881419
Target:  5'- aCGCCCCGGaACgCGCgucgGCGCGCGGCGg -3'
miRNA:   3'- -GCGGGGCUcUG-GUGg---UGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 6027 0.72 0.562876
Target:  5'- cCGCCCCGucgaggagcccGCCGCCGCGCGgcuauCGACACc -3'
miRNA:   3'- -GCGGGGCuc---------UGGUGGUGUGU-----GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 7480 0.7 0.72628
Target:  5'- gCGCCCCGGcGGCCGC-GCGgACGAC-Cg -3'
miRNA:   3'- -GCGGGGCU-CUGGUGgUGUgUGUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 7609 0.68 0.819759
Target:  5'- cCGCgCCCG-GcCCGCCGCACACccuccuucccucgccGCGCg -3'
miRNA:   3'- -GCG-GGGCuCuGGUGGUGUGUGu--------------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 7672 0.7 0.716427
Target:  5'- gCGCCCCGA--CCACCGucguCGC-CGACGCc -3'
miRNA:   3'- -GCGGGGCUcuGGUGGU----GUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 8069 0.68 0.792494
Target:  5'- gGCCCgCGAccCCGCCGCGCcCGGCGg -3'
miRNA:   3'- gCGGG-GCUcuGGUGGUGUGuGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 8158 0.67 0.857166
Target:  5'- uCGCCCCGAgcgggcgaggGACuCACCGCGacccCACGcuccgcccccgcagGCACg -3'
miRNA:   3'- -GCGGGGCU----------CUG-GUGGUGU----GUGU--------------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 8417 0.67 0.843
Target:  5'- gGCCCCggccguaccgGAGGCCGCCGCcccCGCccgccggAGCGCu -3'
miRNA:   3'- gCGGGG----------CUCUGGUGGUGu--GUG-------UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 8749 0.7 0.686477
Target:  5'- -cUCCCG-GGCgCGCCGCACACAcCACc -3'
miRNA:   3'- gcGGGGCuCUG-GUGGUGUGUGUuGUG- -5'
21374 3' -56.4 NC_004812.1 + 9015 0.67 0.869947
Target:  5'- gGCCCCG-GGCCAgCAUuCACGcccgagccaugccguACGCg -3'
miRNA:   3'- gCGGGGCuCUGGUgGUGuGUGU---------------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 9108 0.81 0.202787
Target:  5'- gCGCCUCGGGGCCACCGgACccccGCGGCGCc -3'
miRNA:   3'- -GCGGGGCUCUGGUGGUgUG----UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 9336 0.69 0.745736
Target:  5'- gCGCCaaCCGAGAguCCGCCaucuggccgugGCGCACGGCGg -3'
miRNA:   3'- -GCGG--GGCUCU--GGUGG-----------UGUGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 9401 0.73 0.554884
Target:  5'- gCGCCCCGccuacAGAcCCACCA-GCACAuGCACg -3'
miRNA:   3'- -GCGGGGC-----UCU-GGUGGUgUGUGU-UGUG- -5'
21374 3' -56.4 NC_004812.1 + 9548 0.71 0.656125
Target:  5'- gGCCCCGcuucGGCCACCGCcucuGguUAACACa -3'
miRNA:   3'- gCGGGGCu---CUGGUGGUG----UguGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 9741 0.71 0.625601
Target:  5'- -uCCCCGggaggGGACCGCCACcaggccCGCGGCGCg -3'
miRNA:   3'- gcGGGGC-----UCUGGUGGUGu-----GUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 10200 0.71 0.645958
Target:  5'- uGCCCCGAcgcgGAgCugGCCGCGCACGGCu- -3'
miRNA:   3'- gCGGGGCU----CUgG--UGGUGUGUGUUGug -5'
21374 3' -56.4 NC_004812.1 + 10226 0.76 0.356169
Target:  5'- aGCCCCcAGGCCGCCugAgAuCAGCGCg -3'
miRNA:   3'- gCGGGGcUCUGGUGGugUgU-GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 10653 0.71 0.615426
Target:  5'- aGCCCgaGGGugCcCCGCACcCAGCGCa -3'
miRNA:   3'- gCGGGg-CUCugGuGGUGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 10873 0.67 0.874314
Target:  5'- aGCCCCccGAcCCGCgGgCGCugGACGCg -3'
miRNA:   3'- gCGGGGcuCU-GGUGgU-GUGugUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.