miRNA display CGI


Results 41 - 60 of 466 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 5' -69 NC_004812.1 + 48096 0.66 0.350549
Target:  5'- gCGGCcgCCGCCgugcgcCCCGuGCGGGCgcuggCGCCg- -3'
miRNA:   3'- -GUCGa-GGCGG------GGGC-CGCCCG-----GCGGag -5'
21374 5' -69 NC_004812.1 + 133108 0.66 0.350549
Target:  5'- cCGGCgccgCCGCgCCCGGCccGCCGCa-- -3'
miRNA:   3'- -GUCGa---GGCGgGGGCCGccCGGCGgag -5'
21374 5' -69 NC_004812.1 + 72593 0.66 0.34983
Target:  5'- ----gCCGCCCCCcaaggagGGcCGGGCCGCgaCg -3'
miRNA:   3'- gucgaGGCGGGGG-------CC-GCCCGGCGgaG- -5'
21374 5' -69 NC_004812.1 + 19621 0.66 0.34983
Target:  5'- cCAGC-CgCGCgUCCGGUcucgcggcgacguGGGCCGCCa- -3'
miRNA:   3'- -GUCGaG-GCGgGGGCCG-------------CCCGGCGGag -5'
21374 5' -69 NC_004812.1 + 95547 0.66 0.348396
Target:  5'- gGGCgUCGCgCCCCGGCGGGgucgagcgggcuaaCCGCa-- -3'
miRNA:   3'- gUCGaGGCG-GGGGCCGCCC--------------GGCGgag -5'
21374 5' -69 NC_004812.1 + 143259 0.66 0.343408
Target:  5'- -cGCacccCCGaCCCCCGGCgcggaaGGGaCCGCCg- -3'
miRNA:   3'- guCGa---GGC-GGGGGCCG------CCC-GGCGGag -5'
21374 5' -69 NC_004812.1 + 17189 0.66 0.343408
Target:  5'- cCAGCaccggCCGCCCCggugucguucgCGGcCGGuGCCGCUg- -3'
miRNA:   3'- -GUCGa----GGCGGGG-----------GCC-GCC-CGGCGGag -5'
21374 5' -69 NC_004812.1 + 110927 0.66 0.343408
Target:  5'- gCAGCUggugCCGUCCCgGGgGGGCUuCCa- -3'
miRNA:   3'- -GUCGA----GGCGGGGgCCgCCCGGcGGag -5'
21374 5' -69 NC_004812.1 + 43739 0.66 0.343408
Target:  5'- -cGC-CCGUCCCucgCGGCGGcGCCgguuucgucugGCCUCu -3'
miRNA:   3'- guCGaGGCGGGG---GCCGCC-CGG-----------CGGAG- -5'
21374 5' -69 NC_004812.1 + 1466 0.66 0.343408
Target:  5'- gCGGCgacgCCggcGUCCUCGGCGGGCgGCg-- -3'
miRNA:   3'- -GUCGa---GG---CGGGGGCCGCCCGgCGgag -5'
21374 5' -69 NC_004812.1 + 155264 0.66 0.343408
Target:  5'- aUAGC-CgGCCuUCCGGCGGaCCGCC-Cg -3'
miRNA:   3'- -GUCGaGgCGG-GGGCCGCCcGGCGGaG- -5'
21374 5' -69 NC_004812.1 + 41159 0.66 0.343408
Target:  5'- gGGCUuuauuUCGagCCCCGGCGcGCCGCCcCa -3'
miRNA:   3'- gUCGA-----GGCg-GGGGCCGCcCGGCGGaG- -5'
21374 5' -69 NC_004812.1 + 11670 0.66 0.343408
Target:  5'- uCGGcCUCUcCCCCCGGgGGGCUuCCg- -3'
miRNA:   3'- -GUC-GAGGcGGGGGCCgCCCGGcGGag -5'
21374 5' -69 NC_004812.1 + 124363 0.66 0.343408
Target:  5'- aUAGC-CgGCCuUCCGGCGGaCCGCC-Cg -3'
miRNA:   3'- -GUCGaGgCGG-GGGCCGCCcGGCGGaG- -5'
21374 5' -69 NC_004812.1 + 76018 0.66 0.343408
Target:  5'- gCGGUUCU-CCaCgCGGUccaGGGCCGCCUCc -3'
miRNA:   3'- -GUCGAGGcGG-GgGCCG---CCCGGCGGAG- -5'
21374 5' -69 NC_004812.1 + 154104 0.66 0.343408
Target:  5'- aCGGCcgcgCCGCCgacucgCCCGcccGCGaGGCCGCCg- -3'
miRNA:   3'- -GUCGa---GGCGG------GGGC---CGC-CCGGCGGag -5'
21374 5' -69 NC_004812.1 + 120274 0.66 0.343408
Target:  5'- gAGUccucuUCCGCCCCUcuGGgGGGCCcCCg- -3'
miRNA:   3'- gUCG-----AGGCGGGGG--CCgCCCGGcGGag -5'
21374 5' -69 NC_004812.1 + 126974 0.66 0.343408
Target:  5'- gCGGCgacgCCggcGUCCUCGGCGGGCgGCg-- -3'
miRNA:   3'- -GUCGa---GG---CGGGGGCCGCCCGgCGgag -5'
21374 5' -69 NC_004812.1 + 28596 0.66 0.343408
Target:  5'- aCGGCcgcgCCGCCgacucgCCCGcccGCGaGGCCGCCg- -3'
miRNA:   3'- -GUCGa---GGCGG------GGGC---CGC-CCGGCGGag -5'
21374 5' -69 NC_004812.1 + 132979 0.66 0.343408
Target:  5'- gGGgaCCGCgcgCCCCGGCGG-CCGCg-- -3'
miRNA:   3'- gUCgaGGCG---GGGGCCGCCcGGCGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.