miRNA display CGI


Results 21 - 40 of 466 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 5' -69 NC_004812.1 + 92435 0.66 0.357794
Target:  5'- cCGGCccccgCCGCCcuCCCGcGCGGaGCcCGCCg- -3'
miRNA:   3'- -GUCGa----GGCGG--GGGC-CGCC-CG-GCGGag -5'
21374 5' -69 NC_004812.1 + 153514 0.66 0.353434
Target:  5'- gCGGCgccucccCCGCCCCgcccgccuggaccgaCGcGCGcGGCgGCCUCu -3'
miRNA:   3'- -GUCGa------GGCGGGG---------------GC-CGC-CCGgCGGAG- -5'
21374 5' -69 NC_004812.1 + 28005 0.66 0.353434
Target:  5'- gCGGCgccucccCCGCCCCgcccgccuggaccgaCGcGCGcGGCgGCCUCu -3'
miRNA:   3'- -GUCGa------GGCGGGG---------------GC-CGC-CCGgCGGAG- -5'
21374 5' -69 NC_004812.1 + 35385 0.66 0.350549
Target:  5'- aCGGcCUCUGgaugaCCCCGGUGGGCgGCa-- -3'
miRNA:   3'- -GUC-GAGGCg----GGGGCCGCCCGgCGgag -5'
21374 5' -69 NC_004812.1 + 7600 0.66 0.350549
Target:  5'- cCGGCgccgCCGCgCCCGGCccGCCGCa-- -3'
miRNA:   3'- -GUCGa---GGCGgGGGCCGccCGGCGgag -5'
21374 5' -69 NC_004812.1 + 155340 0.66 0.350549
Target:  5'- -cGC-CCGCCCgCGGCcggcggaccaacGGGCgGCCg- -3'
miRNA:   3'- guCGaGGCGGGgGCCG------------CCCGgCGGag -5'
21374 5' -69 NC_004812.1 + 48096 0.66 0.350549
Target:  5'- gCGGCcgCCGCCgugcgcCCCGuGCGGGCgcuggCGCCg- -3'
miRNA:   3'- -GUCGa-GGCGG------GGGC-CGCCCG-----GCGGag -5'
21374 5' -69 NC_004812.1 + 150816 0.66 0.350549
Target:  5'- gCAGCcCCGCagCCCgaGGCGGG-CGCCg- -3'
miRNA:   3'- -GUCGaGGCGg-GGG--CCGCCCgGCGGag -5'
21374 5' -69 NC_004812.1 + 118940 0.66 0.350549
Target:  5'- gCGGCgcugCUGCCCCCGcugguGUGGGaCUgcgacgGCCUCa -3'
miRNA:   3'- -GUCGa---GGCGGGGGC-----CGCCC-GG------CGGAG- -5'
21374 5' -69 NC_004812.1 + 30776 0.66 0.350549
Target:  5'- gGGCgagCCGgCCCCGccuGCGGGgCCGCg-- -3'
miRNA:   3'- gUCGa--GGCgGGGGC---CGCCC-GGCGgag -5'
21374 5' -69 NC_004812.1 + 124439 0.66 0.350549
Target:  5'- -cGC-CCGCCCgCGGCcggcggaccaacGGGCgGCCg- -3'
miRNA:   3'- guCGaGGCGGGgGCCG------------CCCGgCGGag -5'
21374 5' -69 NC_004812.1 + 133108 0.66 0.350549
Target:  5'- cCGGCgccgCCGCgCCCGGCccGCCGCa-- -3'
miRNA:   3'- -GUCGa---GGCGgGGGCCGccCGGCGgag -5'
21374 5' -69 NC_004812.1 + 18133 0.66 0.350549
Target:  5'- -cGCUCCGCgUCCaGCaGGGCCccGCCg- -3'
miRNA:   3'- guCGAGGCGgGGGcCG-CCCGG--CGGag -5'
21374 5' -69 NC_004812.1 + 119915 0.66 0.350549
Target:  5'- gCAGCcCCGCagCCCgaGGCGGG-CGCCg- -3'
miRNA:   3'- -GUCGaGGCGg-GGG--CCGCCCgGCGGag -5'
21374 5' -69 NC_004812.1 + 17513 0.66 0.350549
Target:  5'- cCAGCcgcgucuuUCgGCuCCCCGuGCaacccaGGGCCaGCCUCg -3'
miRNA:   3'- -GUCG--------AGgCG-GGGGC-CG------CCCGG-CGGAG- -5'
21374 5' -69 NC_004812.1 + 101897 0.66 0.350549
Target:  5'- gGGCUagggCGCCCCgaGGCGcGGCggucggGCCUCg -3'
miRNA:   3'- gUCGAg---GCGGGGg-CCGC-CCGg-----CGGAG- -5'
21374 5' -69 NC_004812.1 + 4484 0.66 0.350549
Target:  5'- aCGGcCUCUGgaugaCCCCGGUGGGCgGCa-- -3'
miRNA:   3'- -GUC-GAGGCg----GGGGCCGCCCGgCGgag -5'
21374 5' -69 NC_004812.1 + 31062 0.66 0.350549
Target:  5'- gUAGCUCU-CCCCCGGCaGGuaCCGCUc- -3'
miRNA:   3'- -GUCGAGGcGGGGGCCGcCC--GGCGGag -5'
21374 5' -69 NC_004812.1 + 108819 0.66 0.350549
Target:  5'- gGGCgacgCaCGCCCuCCGGUcacucGGGCCGCg-- -3'
miRNA:   3'- gUCGa---G-GCGGG-GGCCG-----CCCGGCGgag -5'
21374 5' -69 NC_004812.1 + 43988 0.66 0.350549
Target:  5'- -cGCggUCGCCCgaCCGGCcGGCCuCCUCg -3'
miRNA:   3'- guCGa-GGCGGG--GGCCGcCCGGcGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.