miRNA display CGI


Results 21 - 40 of 466 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 5' -69 NC_004812.1 + 145300 0.75 0.078194
Target:  5'- cCGGCccCCGCCCCgCGGCGccccgcgcGGCgCGCCUCg -3'
miRNA:   3'- -GUCGa-GGCGGGG-GCCGC--------CCG-GCGGAG- -5'
21374 5' -69 NC_004812.1 + 52573 0.75 0.083563
Target:  5'- gAGCUCCccgacgccgcgacgGCCCCgaGGCcguacgccacGGGCCGCCUCa -3'
miRNA:   3'- gUCGAGG--------------CGGGGg-CCG----------CCCGGCGGAG- -5'
21374 5' -69 NC_004812.1 + 26174 0.75 0.084181
Target:  5'- cCAGCgCCGCCUCC-GCGGGCCGCa-- -3'
miRNA:   3'- -GUCGaGGCGGGGGcCGCCCGGCGgag -5'
21374 5' -69 NC_004812.1 + 41120 0.75 0.084181
Target:  5'- aGGCcgggCCGCCgCCCGGCGcGGCCGCacgCg -3'
miRNA:   3'- gUCGa---GGCGG-GGGCCGC-CCGGCGga-G- -5'
21374 5' -69 NC_004812.1 + 106155 0.75 0.088412
Target:  5'- gCGGCUCgGCgUCCGGCuGGGCCGUCg- -3'
miRNA:   3'- -GUCGAGgCGgGGGCCG-CCCGGCGGag -5'
21374 5' -69 NC_004812.1 + 43885 0.74 0.099891
Target:  5'- gCGGUUCgCGCCCggccgCGGCcGGCCGCCUCu -3'
miRNA:   3'- -GUCGAG-GCGGGg----GCCGcCCGGCGGAG- -5'
21374 5' -69 NC_004812.1 + 8252 0.74 0.099891
Target:  5'- gGGgUCCGCCCCCGG-GGG-CGCCg- -3'
miRNA:   3'- gUCgAGGCGGGGGCCgCCCgGCGGag -5'
21374 5' -69 NC_004812.1 + 63067 0.74 0.099891
Target:  5'- uGGCUCCGCCCCCacGGCccccuccGGCCGCucCUCc -3'
miRNA:   3'- gUCGAGGCGGGGG--CCGc------CCGGCG--GAG- -5'
21374 5' -69 NC_004812.1 + 39153 0.74 0.099891
Target:  5'- gGGgUCCGCCCCCGG-GGG-CGCCg- -3'
miRNA:   3'- gUCgAGGCGGGGGCCgCCCgGCGGag -5'
21374 5' -69 NC_004812.1 + 113698 0.74 0.099891
Target:  5'- gAGCUCUGCgCCCGGC--GCCGCCUg -3'
miRNA:   3'- gUCGAGGCGgGGGCCGccCGGCGGAg -5'
21374 5' -69 NC_004812.1 + 83365 0.73 0.107439
Target:  5'- gCGGC-CCGCCUgggGGCGGGCCGCC-Cg -3'
miRNA:   3'- -GUCGaGGCGGGgg-CCGCCCGGCGGaG- -5'
21374 5' -69 NC_004812.1 + 35921 0.73 0.110072
Target:  5'- gAGCUCgCGCUCCCGG-GcGGCCGCUUg -3'
miRNA:   3'- gUCGAG-GCGGGGGCCgC-CCGGCGGAg -5'
21374 5' -69 NC_004812.1 + 12976 0.73 0.110072
Target:  5'- -cGCUCCGCgCCCG--GGGCCGCgCUCg -3'
miRNA:   3'- guCGAGGCGgGGGCcgCCCGGCG-GAG- -5'
21374 5' -69 NC_004812.1 + 112446 0.73 0.110072
Target:  5'- cCGGCUCgGCCCCCGaGCGcccuccGGCCGUC-Cg -3'
miRNA:   3'- -GUCGAGgCGGGGGC-CGC------CCGGCGGaG- -5'
21374 5' -69 NC_004812.1 + 83085 0.73 0.110072
Target:  5'- gGGC-CCGCCCCCGGCcaccGGCCuCCUg -3'
miRNA:   3'- gUCGaGGCGGGGGCCGc---CCGGcGGAg -5'
21374 5' -69 NC_004812.1 + 128820 0.73 0.112766
Target:  5'- cCGGCcCCGCCCucucccCCGGCGGGCUggGCCg- -3'
miRNA:   3'- -GUCGaGGCGGG------GGCCGCCCGG--CGGag -5'
21374 5' -69 NC_004812.1 + 32693 0.73 0.115521
Target:  5'- -cGCUCCGCCCCgccgcagcaUGGCggacgucgGGGCCGCCcCg -3'
miRNA:   3'- guCGAGGCGGGG---------GCCG--------CCCGGCGGaG- -5'
21374 5' -69 NC_004812.1 + 1792 0.73 0.115521
Target:  5'- -cGCUCCGCCCCgccgcagcaUGGCggacgucgGGGCCGCCcCg -3'
miRNA:   3'- guCGAGGCGGGG---------GCCG--------CCCGGCGGaG- -5'
21374 5' -69 NC_004812.1 + 64703 0.73 0.118338
Target:  5'- gCGGCgggCCcucaggGCCCCC-GCGGGCUGCUUCa -3'
miRNA:   3'- -GUCGa--GG------CGGGGGcCGCCCGGCGGAG- -5'
21374 5' -69 NC_004812.1 + 68873 0.73 0.12122
Target:  5'- -cGgUCCGCggCCCCGGCGcccgcGCCGCCUCc -3'
miRNA:   3'- guCgAGGCG--GGGGCCGCc----CGGCGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.