miRNA display CGI


Results 1 - 20 of 466 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 5' -69 NC_004812.1 + 118846 1.08 0.000266
Target:  5'- uCAGCUCCGCCCCCGGCGGGCCGCCUCg -3'
miRNA:   3'- -GUCGAGGCGGGGGCCGCCCGGCGGAG- -5'
21374 5' -69 NC_004812.1 + 149747 1.08 0.000266
Target:  5'- uCAGCUCCGCCCCCGGCGGGCCGCCUCg -3'
miRNA:   3'- -GUCGAGGCGGGGGCCGCCCGGCGGAG- -5'
21374 5' -69 NC_004812.1 + 73246 0.88 0.008921
Target:  5'- gCGGC-CCGCCCCCaGGCGGGCCGCCa- -3'
miRNA:   3'- -GUCGaGGCGGGGG-CCGCCCGGCGGag -5'
21374 5' -69 NC_004812.1 + 12543 0.83 0.021212
Target:  5'- gCAGCUCCgccagGCCCCCGGCGGcguGCCGCCg- -3'
miRNA:   3'- -GUCGAGG-----CGGGGGCCGCC---CGGCGGag -5'
21374 5' -69 NC_004812.1 + 107858 0.82 0.025333
Target:  5'- gGGCUCCGCCUCCgagGGCGGaGCCGCCa- -3'
miRNA:   3'- gUCGAGGCGGGGG---CCGCC-CGGCGGag -5'
21374 5' -69 NC_004812.1 + 140391 0.8 0.032622
Target:  5'- cCGGCUCCGCCUCCGGCgcgcggcccGGGuCCGCCg- -3'
miRNA:   3'- -GUCGAGGCGGGGGCCG---------CCC-GGCGGag -5'
21374 5' -69 NC_004812.1 + 48750 0.8 0.035186
Target:  5'- gCGGCUCCGCCCUCggaGGCGGaGCCccGCCUCc -3'
miRNA:   3'- -GUCGAGGCGGGGG---CCGCC-CGG--CGGAG- -5'
21374 5' -69 NC_004812.1 + 33035 0.8 0.038043
Target:  5'- uCGGCcgCCGCCCCCGGCGGccccuuuugacggccCCGCCUCc -3'
miRNA:   3'- -GUCGa-GGCGGGGGCCGCCc--------------GGCGGAG- -5'
21374 5' -69 NC_004812.1 + 143583 0.79 0.040921
Target:  5'- cCGGCcCCGCgacCCCCGGCGaucaGGCCGCCUCc -3'
miRNA:   3'- -GUCGaGGCG---GGGGCCGC----CCGGCGGAG- -5'
21374 5' -69 NC_004812.1 + 79446 0.77 0.055263
Target:  5'- aCGGCgCCGCCgCgGGCGGGCUGCCg- -3'
miRNA:   3'- -GUCGaGGCGGgGgCCGCCCGGCGGag -5'
21374 5' -69 NC_004812.1 + 14217 0.77 0.056658
Target:  5'- uCGGCcCCGCCCCCGGCGgccacGGCgCGCCg- -3'
miRNA:   3'- -GUCGaGGCGGGGGCCGC-----CCG-GCGGag -5'
21374 5' -69 NC_004812.1 + 28302 0.76 0.067255
Target:  5'- uUAGC-CgCGCCuccaauuCCCGGUGGGCCGCCUUg -3'
miRNA:   3'- -GUCGaG-GCGG-------GGGCCGCCCGGCGGAG- -5'
21374 5' -69 NC_004812.1 + 153090 0.76 0.067422
Target:  5'- gCGGCcCCGCCCCCG--GGGCCGCCg- -3'
miRNA:   3'- -GUCGaGGCGGGGGCcgCCCGGCGGag -5'
21374 5' -69 NC_004812.1 + 27582 0.76 0.067422
Target:  5'- gCGGCcCCGCCCCCG--GGGCCGCCg- -3'
miRNA:   3'- -GUCGaGGCGGGGGCcgCCCGGCGGag -5'
21374 5' -69 NC_004812.1 + 77165 0.76 0.069112
Target:  5'- gCAGC-CCGCCCgCGGCGGcGCCGUCc- -3'
miRNA:   3'- -GUCGaGGCGGGgGCCGCC-CGGCGGag -5'
21374 5' -69 NC_004812.1 + 75433 0.76 0.070844
Target:  5'- cCAGCUCCGCCgCggCGGcCGGGUCGCCg- -3'
miRNA:   3'- -GUCGAGGCGGgG--GCC-GCCCGGCGGag -5'
21374 5' -69 NC_004812.1 + 8518 0.75 0.076291
Target:  5'- --aCUCCGCCCCCGGCGauccGGCCaaucgGCCUUa -3'
miRNA:   3'- gucGAGGCGGGGGCCGC----CCGG-----CGGAG- -5'
21374 5' -69 NC_004812.1 + 25201 0.75 0.077619
Target:  5'- gCGGCUCCGCCCgCCGGCGgacgggguauaugaGGCCGgCg- -3'
miRNA:   3'- -GUCGAGGCGGG-GGCCGC--------------CCGGCgGag -5'
21374 5' -69 NC_004812.1 + 150709 0.75 0.077619
Target:  5'- gCGGCUCCGCCCgCCGGCGgacgggguauaugaGGCCGgCg- -3'
miRNA:   3'- -GUCGAGGCGGG-GGCCGC--------------CCGGCgGag -5'
21374 5' -69 NC_004812.1 + 145300 0.75 0.078194
Target:  5'- cCGGCccCCGCCCCgCGGCGccccgcgcGGCgCGCCUCg -3'
miRNA:   3'- -GUCGa-GGCGGGG-GCCGC--------CCG-GCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.