miRNA display CGI


Results 1 - 20 of 466 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 5' -69 NC_004812.1 + 6 0.67 0.277819
Target:  5'- gGGC-CCuCCCCCGGCGGcGCgCGCg-- -3'
miRNA:   3'- gUCGaGGcGGGGGCCGCC-CG-GCGgag -5'
21374 5' -69 NC_004812.1 + 72 0.68 0.237588
Target:  5'- gGGCUCCcgggcggGCUCCCgGGCGGGCUcccgGCCcCg -3'
miRNA:   3'- gUCGAGG-------CGGGGG-CCGCCCGG----CGGaG- -5'
21374 5' -69 NC_004812.1 + 584 0.67 0.277819
Target:  5'- gCGGCgCgGCCCCCGGCcccGGGCguccCCUCc -3'
miRNA:   3'- -GUCGaGgCGGGGGCCG---CCCGgc--GGAG- -5'
21374 5' -69 NC_004812.1 + 669 0.71 0.149876
Target:  5'- cCAGgUUCGCaCCCCGGCGcucccgcGGCCcgGCCUCc -3'
miRNA:   3'- -GUCgAGGCG-GGGGCCGC-------CCGG--CGGAG- -5'
21374 5' -69 NC_004812.1 + 707 0.7 0.194169
Target:  5'- gAGCUCCGUcggcgucggCgCCGGCGcGGUCGCCg- -3'
miRNA:   3'- gUCGAGGCG---------GgGGCCGC-CCGGCGGag -5'
21374 5' -69 NC_004812.1 + 759 0.68 0.265963
Target:  5'- -cGCcUCGCCuCCCGGCgccgcGGGCCccuucuggGCCUCg -3'
miRNA:   3'- guCGaGGCGG-GGGCCG-----CCCGG--------CGGAG- -5'
21374 5' -69 NC_004812.1 + 1092 0.66 0.329443
Target:  5'- gCGGuCUCCuCCugCCCGGCggcccGGGUCGCUUCg -3'
miRNA:   3'- -GUC-GAGGcGG--GGGCCG-----CCCGGCGGAG- -5'
21374 5' -69 NC_004812.1 + 1233 0.68 0.242945
Target:  5'- gGGCUCCuCCCCgcccgggCGGCGccgcGGCCGCC-Cg -3'
miRNA:   3'- gUCGAGGcGGGG-------GCCGC----CCGGCGGaG- -5'
21374 5' -69 NC_004812.1 + 1276 0.69 0.222611
Target:  5'- gCAGaUUCCgGCCCCCaggguccccggaGGCGGGgCGCCg- -3'
miRNA:   3'- -GUC-GAGG-CGGGGG------------CCGCCCgGCGGag -5'
21374 5' -69 NC_004812.1 + 1466 0.66 0.343408
Target:  5'- gCGGCgacgCCggcGUCCUCGGCGGGCgGCg-- -3'
miRNA:   3'- -GUCGa---GG---CGGGGGCCGCCCGgCGgag -5'
21374 5' -69 NC_004812.1 + 1683 0.71 0.172947
Target:  5'- gCGGC-CCGCCCgCGGCGGGggaUGCCc- -3'
miRNA:   3'- -GUCGaGGCGGGgGCCGCCCg--GCGGag -5'
21374 5' -69 NC_004812.1 + 1792 0.73 0.115521
Target:  5'- -cGCUCCGCCCCgccgcagcaUGGCggacgucgGGGCCGCCcCg -3'
miRNA:   3'- guCGAGGCGGGG---------GCCG--------CCCGGCGGaG- -5'
21374 5' -69 NC_004812.1 + 1894 0.68 0.260191
Target:  5'- gGGCcCCGCCCgCGGCaccccguauauGGGCCGaggCUCc -3'
miRNA:   3'- gUCGaGGCGGGgGCCG-----------CCCGGCg--GAG- -5'
21374 5' -69 NC_004812.1 + 2924 0.68 0.251168
Target:  5'- gAGC-CCGCCCCguccucggucacccuCGGCGGGCgcaccgugcgCGcCCUCu -3'
miRNA:   3'- gUCGaGGCGGGG---------------GCCGCCCG----------GC-GGAG- -5'
21374 5' -69 NC_004812.1 + 3408 0.68 0.243486
Target:  5'- -cGC-CCGCcuccCCCCGGCGGcccuccggcGCCGCCg- -3'
miRNA:   3'- guCGaGGCG----GGGGCCGCC---------CGGCGGag -5'
21374 5' -69 NC_004812.1 + 3440 0.71 0.168959
Target:  5'- gCGGCgccagCCGCCgcgggggucgggCCCGGCGGGCgGUCg- -3'
miRNA:   3'- -GUCGa----GGCGG------------GGGCCGCCCGgCGGag -5'
21374 5' -69 NC_004812.1 + 3498 0.68 0.260191
Target:  5'- -cGC-CCGCCCCCGGgGcGG-CGCC-Ca -3'
miRNA:   3'- guCGaGGCGGGGGCCgC-CCgGCGGaG- -5'
21374 5' -69 NC_004812.1 + 3766 0.67 0.277819
Target:  5'- cCAGC-CCGCCgcccaaguccccCCCGGCGcucaGGCCcGaCCUCa -3'
miRNA:   3'- -GUCGaGGCGG------------GGGCCGC----CCGG-C-GGAG- -5'
21374 5' -69 NC_004812.1 + 3840 0.66 0.321943
Target:  5'- aGGCcCCGCCCCuCuGCGccguggucgccgcGGCCGCCg- -3'
miRNA:   3'- gUCGaGGCGGGG-GcCGC-------------CCGGCGGag -5'
21374 5' -69 NC_004812.1 + 3893 0.68 0.248953
Target:  5'- cCGGcCUCCGCCUCCGa--GGCCGCCc- -3'
miRNA:   3'- -GUC-GAGGCGGGGGCcgcCCGGCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.