miRNA display CGI


Results 1 - 20 of 466 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 5' -69 NC_004812.1 + 45729 0.66 0.328756
Target:  5'- aCGGC-CUGCCgCCgGGCGGGCUccgcggaGCC-Cg -3'
miRNA:   3'- -GUCGaGGCGG-GGgCCGCCCGG-------CGGaG- -5'
21374 5' -69 NC_004812.1 + 72552 0.66 0.336373
Target:  5'- gGGaaCCGCgCCUCGGgGGGgCGCCg- -3'
miRNA:   3'- gUCgaGGCG-GGGGCCgCCCgGCGGag -5'
21374 5' -69 NC_004812.1 + 154518 0.66 0.332202
Target:  5'- gCGGCccgggCCGCCCCgaggacugguagacgCGGgGGGCgCGCCc- -3'
miRNA:   3'- -GUCGa----GGCGGGG---------------GCCgCCCG-GCGGag -5'
21374 5' -69 NC_004812.1 + 142278 0.66 0.32262
Target:  5'- gCGGCUCCcggaGCUCCUGGacgaGGGCCccggGCCg- -3'
miRNA:   3'- -GUCGAGG----CGGGGGCCg---CCCGG----CGGag -5'
21374 5' -69 NC_004812.1 + 82523 0.66 0.32262
Target:  5'- gGGC-CCGCgaggCCCCGGgaGGcGCCGCC-Cg -3'
miRNA:   3'- gUCGaGGCG----GGGGCCg-CC-CGGCGGaG- -5'
21374 5' -69 NC_004812.1 + 116121 0.66 0.32262
Target:  5'- -cGC-CCGCCCUCGGggccCGGGCC-CCg- -3'
miRNA:   3'- guCGaGGCGGGGGCC----GCCCGGcGGag -5'
21374 5' -69 NC_004812.1 + 94571 0.66 0.329443
Target:  5'- gGGCUCgggGCCUCCuccGCccgaGGCCGCCUCg -3'
miRNA:   3'- gUCGAGg--CGGGGGc--CGc---CCGGCGGAG- -5'
21374 5' -69 NC_004812.1 + 1092 0.66 0.329443
Target:  5'- gCGGuCUCCuCCugCCCGGCggcccGGGUCGCUUCg -3'
miRNA:   3'- -GUC-GAGGcGG--GGGCCG-----CCCGGCGGAG- -5'
21374 5' -69 NC_004812.1 + 58054 0.66 0.32262
Target:  5'- gAGCUCuCGUgggCCCCGGCGcccggcgccgaGGCCGCg-- -3'
miRNA:   3'- gUCGAG-GCG---GGGGCCGC-----------CCGGCGgag -5'
21374 5' -69 NC_004812.1 + 28886 0.66 0.32262
Target:  5'- gAGUUCCugGCCCCCGaGCugguccgcgccGuGGCgCGCCUCc -3'
miRNA:   3'- gUCGAGG--CGGGGGC-CG-----------C-CCG-GCGGAG- -5'
21374 5' -69 NC_004812.1 + 55707 0.66 0.329443
Target:  5'- gCGGCcgucUCCGCgCCCCGccucGgGGGCCGCg-- -3'
miRNA:   3'- -GUCG----AGGCG-GGGGC----CgCCCGGCGgag -5'
21374 5' -69 NC_004812.1 + 116593 0.66 0.365144
Target:  5'- cCGGC-CCGCC----GCGGGCCGCCg- -3'
miRNA:   3'- -GUCGaGGCGGgggcCGCCCGGCGGag -5'
21374 5' -69 NC_004812.1 + 115486 0.66 0.329443
Target:  5'- -uGCggCCGCgCCgGGCGgcGGCCcgGCCUCa -3'
miRNA:   3'- guCGa-GGCGgGGgCCGC--CCGG--CGGAG- -5'
21374 5' -69 NC_004812.1 + 77216 0.66 0.32262
Target:  5'- -cGCUCUcgaGCUCgCCGcGCaGGGCCGCgUCg -3'
miRNA:   3'- guCGAGG---CGGG-GGC-CG-CCCGGCGgAG- -5'
21374 5' -69 NC_004812.1 + 3840 0.66 0.321943
Target:  5'- aGGCcCCGCCCCuCuGCGccguggucgccgcGGCCGCCg- -3'
miRNA:   3'- gUCGaGGCGGGG-GcCGC-------------CCGGCGGag -5'
21374 5' -69 NC_004812.1 + 46292 0.66 0.32262
Target:  5'- gGGCggCCGgaggCCgCGGCGGGCCGCg-- -3'
miRNA:   3'- gUCGa-GGCg---GGgGCCGCCCGGCGgag -5'
21374 5' -69 NC_004812.1 + 150671 0.66 0.329443
Target:  5'- gAGCcgccggUCGCCCCCGcGCuccGGGCgGCgUCg -3'
miRNA:   3'- gUCGa-----GGCGGGGGC-CG---CCCGgCGgAG- -5'
21374 5' -69 NC_004812.1 + 101473 0.66 0.32262
Target:  5'- cCAGCUCCugGCCCuggcgcaggguCCGGCGGuagaagaCCGCCg- -3'
miRNA:   3'- -GUCGAGG--CGGG-----------GGCCGCCc------GGCGGag -5'
21374 5' -69 NC_004812.1 + 104694 0.66 0.32262
Target:  5'- aCAGCUgggCCGCCgCCaugcgGGCGugcguGGCCGCCa- -3'
miRNA:   3'- -GUCGA---GGCGGgGG-----CCGC-----CCGGCGGag -5'
21374 5' -69 NC_004812.1 + 27473 0.66 0.32262
Target:  5'- uCAGCgCCGCCCCgGcGCGGagggcgcaGUCGCC-Ca -3'
miRNA:   3'- -GUCGaGGCGGGGgC-CGCC--------CGGCGGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.