Results 1 - 20 of 466 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21374 | 5' | -69 | NC_004812.1 | + | 4050 | 0.73 | 0.124167 |
Target: 5'- -cGCUCCGCCUCCGccGCaGGCCGCucCUCc -3' miRNA: 3'- guCGAGGCGGGGGC--CGcCCGGCG--GAG- -5' |
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21374 | 5' | -69 | NC_004812.1 | + | 106155 | 0.75 | 0.088412 |
Target: 5'- gCGGCUCgGCgUCCGGCuGGGCCGUCg- -3' miRNA: 3'- -GUCGAGgCGgGGGCCG-CCCGGCGGag -5' |
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21374 | 5' | -69 | NC_004812.1 | + | 8252 | 0.74 | 0.099891 |
Target: 5'- gGGgUCCGCCCCCGG-GGG-CGCCg- -3' miRNA: 3'- gUCgAGGCGGGGGCCgCCCgGCGGag -5' |
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21374 | 5' | -69 | NC_004812.1 | + | 113698 | 0.74 | 0.099891 |
Target: 5'- gAGCUCUGCgCCCGGC--GCCGCCUg -3' miRNA: 3'- gUCGAGGCGgGGGCCGccCGGCGGAg -5' |
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21374 | 5' | -69 | NC_004812.1 | + | 35921 | 0.73 | 0.110072 |
Target: 5'- gAGCUCgCGCUCCCGG-GcGGCCGCUUg -3' miRNA: 3'- gUCGAG-GCGGGGGCCgC-CCGGCGGAg -5' |
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21374 | 5' | -69 | NC_004812.1 | + | 12976 | 0.73 | 0.110072 |
Target: 5'- -cGCUCCGCgCCCG--GGGCCGCgCUCg -3' miRNA: 3'- guCGAGGCGgGGGCcgCCCGGCG-GAG- -5' |
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21374 | 5' | -69 | NC_004812.1 | + | 112446 | 0.73 | 0.110072 |
Target: 5'- cCGGCUCgGCCCCCGaGCGcccuccGGCCGUC-Cg -3' miRNA: 3'- -GUCGAGgCGGGGGC-CGC------CCGGCGGaG- -5' |
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21374 | 5' | -69 | NC_004812.1 | + | 1792 | 0.73 | 0.115521 |
Target: 5'- -cGCUCCGCCCCgccgcagcaUGGCggacgucgGGGCCGCCcCg -3' miRNA: 3'- guCGAGGCGGGG---------GCCG--------CCCGGCGGaG- -5' |
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21374 | 5' | -69 | NC_004812.1 | + | 68873 | 0.73 | 0.12122 |
Target: 5'- -cGgUCCGCggCCCCGGCGcccgcGCCGCCUCc -3' miRNA: 3'- guCgAGGCG--GGGGCCGCc----CGGCGGAG- -5' |
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21374 | 5' | -69 | NC_004812.1 | + | 145300 | 0.75 | 0.078194 |
Target: 5'- cCGGCccCCGCCCCgCGGCGccccgcgcGGCgCGCCUCg -3' miRNA: 3'- -GUCGa-GGCGGGG-GCCGC--------CCG-GCGGAG- -5' |
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21374 | 5' | -69 | NC_004812.1 | + | 150709 | 0.75 | 0.077619 |
Target: 5'- gCGGCUCCGCCCgCCGGCGgacgggguauaugaGGCCGgCg- -3' miRNA: 3'- -GUCGAGGCGGG-GGCCGC--------------CCGGCgGag -5' |
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21374 | 5' | -69 | NC_004812.1 | + | 75433 | 0.76 | 0.070844 |
Target: 5'- cCAGCUCCGCCgCggCGGcCGGGUCGCCg- -3' miRNA: 3'- -GUCGAGGCGGgG--GCC-GCCCGGCGGag -5' |
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21374 | 5' | -69 | NC_004812.1 | + | 73246 | 0.88 | 0.008921 |
Target: 5'- gCGGC-CCGCCCCCaGGCGGGCCGCCa- -3' miRNA: 3'- -GUCGaGGCGGGGG-CCGCCCGGCGGag -5' |
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21374 | 5' | -69 | NC_004812.1 | + | 12543 | 0.83 | 0.021212 |
Target: 5'- gCAGCUCCgccagGCCCCCGGCGGcguGCCGCCg- -3' miRNA: 3'- -GUCGAGG-----CGGGGGCCGCC---CGGCGGag -5' |
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21374 | 5' | -69 | NC_004812.1 | + | 107858 | 0.82 | 0.025333 |
Target: 5'- gGGCUCCGCCUCCgagGGCGGaGCCGCCa- -3' miRNA: 3'- gUCGAGGCGGGGG---CCGCC-CGGCGGag -5' |
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21374 | 5' | -69 | NC_004812.1 | + | 33035 | 0.8 | 0.038043 |
Target: 5'- uCGGCcgCCGCCCCCGGCGGccccuuuugacggccCCGCCUCc -3' miRNA: 3'- -GUCGa-GGCGGGGGCCGCCc--------------GGCGGAG- -5' |
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21374 | 5' | -69 | NC_004812.1 | + | 14217 | 0.77 | 0.056658 |
Target: 5'- uCGGCcCCGCCCCCGGCGgccacGGCgCGCCg- -3' miRNA: 3'- -GUCGaGGCGGGGGCCGC-----CCG-GCGGag -5' |
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21374 | 5' | -69 | NC_004812.1 | + | 28302 | 0.76 | 0.067255 |
Target: 5'- uUAGC-CgCGCCuccaauuCCCGGUGGGCCGCCUUg -3' miRNA: 3'- -GUCGaG-GCGG-------GGGCCGCCCGGCGGAG- -5' |
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21374 | 5' | -69 | NC_004812.1 | + | 153090 | 0.76 | 0.067422 |
Target: 5'- gCGGCcCCGCCCCCG--GGGCCGCCg- -3' miRNA: 3'- -GUCGaGGCGGGGGCcgCCCGGCGGag -5' |
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21374 | 5' | -69 | NC_004812.1 | + | 77165 | 0.76 | 0.069112 |
Target: 5'- gCAGC-CCGCCCgCGGCGGcGCCGUCc- -3' miRNA: 3'- -GUCGaGGCGGGgGCCGCC-CGGCGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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