miRNA display CGI


Results 21 - 40 of 466 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 5' -69 NC_004812.1 + 79356 0.66 0.336373
Target:  5'- cCAGCggCGCCCCCGcGaGGGCagCGCCcCa -3'
miRNA:   3'- -GUCGagGCGGGGGC-CgCCCG--GCGGaG- -5'
21374 5' -69 NC_004812.1 + 104694 0.66 0.32262
Target:  5'- aCAGCUgggCCGCCgCCaugcgGGCGugcguGGCCGCCa- -3'
miRNA:   3'- -GUCGA---GGCGGgGG-----CCGC-----CCGGCGGag -5'
21374 5' -69 NC_004812.1 + 76018 0.66 0.343408
Target:  5'- gCGGUUCU-CCaCgCGGUccaGGGCCGCCUCc -3'
miRNA:   3'- -GUCGAGGcGG-GgGCCG---CCCGGCGGAG- -5'
21374 5' -69 NC_004812.1 + 154104 0.66 0.343408
Target:  5'- aCGGCcgcgCCGCCgacucgCCCGcccGCGaGGCCGCCg- -3'
miRNA:   3'- -GUCGa---GGCGG------GGGC---CGC-CCGGCGGag -5'
21374 5' -69 NC_004812.1 + 77216 0.66 0.32262
Target:  5'- -cGCUCUcgaGCUCgCCGcGCaGGGCCGCgUCg -3'
miRNA:   3'- guCGAGG---CGGG-GGC-CG-CCCGGCGgAG- -5'
21374 5' -69 NC_004812.1 + 55707 0.66 0.329443
Target:  5'- gCGGCcgucUCCGCgCCCCGccucGgGGGCCGCg-- -3'
miRNA:   3'- -GUCG----AGGCG-GGGGC----CgCCCGGCGgag -5'
21374 5' -69 NC_004812.1 + 115398 0.66 0.343408
Target:  5'- gCAGCgcguagucgCCGCCCCgcgCGGCGcGCCGaCCg- -3'
miRNA:   3'- -GUCGa--------GGCGGGG---GCCGCcCGGC-GGag -5'
21374 5' -69 NC_004812.1 + 46292 0.66 0.32262
Target:  5'- gGGCggCCGgaggCCgCGGCGGGCCGCg-- -3'
miRNA:   3'- gUCGa-GGCg---GGgGCCGCCCGGCGgag -5'
21374 5' -69 NC_004812.1 + 52284 0.66 0.336373
Target:  5'- aAGUccuccucgCCGCCCCCGGaGGcGCCGUCc- -3'
miRNA:   3'- gUCGa-------GGCGGGGGCCgCC-CGGCGGag -5'
21374 5' -69 NC_004812.1 + 143259 0.66 0.343408
Target:  5'- -cGCacccCCGaCCCCCGGCgcggaaGGGaCCGCCg- -3'
miRNA:   3'- guCGa---GGC-GGGGGCCG------CCC-GGCGGag -5'
21374 5' -69 NC_004812.1 + 120274 0.66 0.343408
Target:  5'- gAGUccucuUCCGCCCCUcuGGgGGGCCcCCg- -3'
miRNA:   3'- gUCG-----AGGCGGGGG--CCgCCCGGcGGag -5'
21374 5' -69 NC_004812.1 + 126974 0.66 0.343408
Target:  5'- gCGGCgacgCCggcGUCCUCGGCGGGCgGCg-- -3'
miRNA:   3'- -GUCGa---GG---CGGGGGCCGCCCGgCGgag -5'
21374 5' -69 NC_004812.1 + 124363 0.66 0.343408
Target:  5'- aUAGC-CgGCCuUCCGGCGGaCCGCC-Cg -3'
miRNA:   3'- -GUCGaGgCGG-GGGCCGCCcGGCGGaG- -5'
21374 5' -69 NC_004812.1 + 110927 0.66 0.343408
Target:  5'- gCAGCUggugCCGUCCCgGGgGGGCUuCCa- -3'
miRNA:   3'- -GUCGA----GGCGGGGgCCgCCCGGcGGag -5'
21374 5' -69 NC_004812.1 + 58054 0.66 0.32262
Target:  5'- gAGCUCuCGUgggCCCCGGCGcccggcgccgaGGCCGCg-- -3'
miRNA:   3'- gUCGAG-GCG---GGGGCCGC-----------CCGGCGgag -5'
21374 5' -69 NC_004812.1 + 28886 0.66 0.32262
Target:  5'- gAGUUCCugGCCCCCGaGCugguccgcgccGuGGCgCGCCUCc -3'
miRNA:   3'- gUCGAGG--CGGGGGC-CG-----------C-CCG-GCGGAG- -5'
21374 5' -69 NC_004812.1 + 154518 0.66 0.332202
Target:  5'- gCGGCccgggCCGCCCCgaggacugguagacgCGGgGGGCgCGCCc- -3'
miRNA:   3'- -GUCGa----GGCGGGG---------------GCCgCCCG-GCGGag -5'
21374 5' -69 NC_004812.1 + 132979 0.66 0.343408
Target:  5'- gGGgaCCGCgcgCCCCGGCGG-CCGCg-- -3'
miRNA:   3'- gUCgaGGCG---GGGGCCGCCcGGCGgag -5'
21374 5' -69 NC_004812.1 + 116593 0.66 0.365144
Target:  5'- cCGGC-CCGCC----GCGGGCCGCCg- -3'
miRNA:   3'- -GUCGaGGCGGgggcCGCCCGGCGGag -5'
21374 5' -69 NC_004812.1 + 100372 0.66 0.343408
Target:  5'- cCGGCgcCCGCCgCCGGgGGGCgcgagGCCa- -3'
miRNA:   3'- -GUCGa-GGCGGgGGCCgCCCGg----CGGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.