miRNA display CGI


Results 21 - 40 of 466 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 5' -69 NC_004812.1 + 4050 0.73 0.124167
Target:  5'- -cGCUCCGCCUCCGccGCaGGCCGCucCUCc -3'
miRNA:   3'- guCGAGGCGGGGGC--CGcCCGGCG--GAG- -5'
21374 5' -69 NC_004812.1 + 4091 0.71 0.165053
Target:  5'- ----cCCGCggCCCCGGCgGGGCCGuCCUCc -3'
miRNA:   3'- gucgaGGCG--GGGGCCG-CCCGGC-GGAG- -5'
21374 5' -69 NC_004812.1 + 4484 0.66 0.350549
Target:  5'- aCGGcCUCUGgaugaCCCCGGUGGGCgGCa-- -3'
miRNA:   3'- -GUC-GAGGCg----GGGGCCGCCCGgCGgag -5'
21374 5' -69 NC_004812.1 + 4623 0.68 0.271839
Target:  5'- cCAGCUCgggCGCCCacaCGggcGCGGGCgCGCCg- -3'
miRNA:   3'- -GUCGAG---GCGGGg--GC---CGCCCG-GCGGag -5'
21374 5' -69 NC_004812.1 + 4692 0.67 0.302785
Target:  5'- cCGGCgcgCCccagaGCCCCgGGCGgcugucgcccaGGCCGCCg- -3'
miRNA:   3'- -GUCGa--GG-----CGGGGgCCGC-----------CCGGCGGag -5'
21374 5' -69 NC_004812.1 + 4846 0.67 0.296385
Target:  5'- gGGCaCgGCCCgCGGCGGcGCgGCCg- -3'
miRNA:   3'- gUCGaGgCGGGgGCCGCC-CGgCGGag -5'
21374 5' -69 NC_004812.1 + 5058 0.68 0.260191
Target:  5'- gGGCgccgCGCCCCCGGCcccGGCCccGCCgUCg -3'
miRNA:   3'- gUCGag--GCGGGGGCCGc--CCGG--CGG-AG- -5'
21374 5' -69 NC_004812.1 + 5310 0.67 0.315902
Target:  5'- gAGCUCCGCgagcgcgucguCCgCCGG-GGcGCCGCC-Cg -3'
miRNA:   3'- gUCGAGGCG-----------GG-GGCCgCC-CGGCGGaG- -5'
21374 5' -69 NC_004812.1 + 5887 0.67 0.296385
Target:  5'- cCGGCcucauauaccCCGUCCgCCGGCGGGCggaGCCg- -3'
miRNA:   3'- -GUCGa---------GGCGGG-GGCCGCCCGg--CGGag -5'
21374 5' -69 NC_004812.1 + 5958 0.67 0.302785
Target:  5'- gCGGCUCCGCCCCgucgaGGaucucauuaUGGGCCcacGCCcCg -3'
miRNA:   3'- -GUCGAGGCGGGGg----CC---------GCCCGG---CGGaG- -5'
21374 5' -69 NC_004812.1 + 6217 0.67 0.290091
Target:  5'- -cGCggacgCCGCCCCugccgccgCGGCcccgcGGCCGUCUCg -3'
miRNA:   3'- guCGa----GGCGGGG--------GCCGc----CCGGCGGAG- -5'
21374 5' -69 NC_004812.1 + 6432 0.71 0.157485
Target:  5'- aCAGC-CCGCCCggCGGgGGGaCCGCCg- -3'
miRNA:   3'- -GUCGaGGCGGGg-GCCgCCC-GGCGGag -5'
21374 5' -69 NC_004812.1 + 6789 0.68 0.238119
Target:  5'- gGGCgagCCGUgCCUCGGgGGGCgCGCCg- -3'
miRNA:   3'- gUCGa--GGCG-GGGGCCgCCCG-GCGGag -5'
21374 5' -69 NC_004812.1 + 7471 0.66 0.343408
Target:  5'- gGGgaCCGCgcgCCCCGGCGG-CCGCg-- -3'
miRNA:   3'- gUCgaGGCG---GGGGCCGCCcGGCGgag -5'
21374 5' -69 NC_004812.1 + 7507 0.71 0.165053
Target:  5'- gGGCgcccaacccCCGCCCCgCGGCGcGCCGCCc- -3'
miRNA:   3'- gUCGa--------GGCGGGG-GCCGCcCGGCGGag -5'
21374 5' -69 NC_004812.1 + 7600 0.66 0.350549
Target:  5'- cCGGCgccgCCGCgCCCGGCccGCCGCa-- -3'
miRNA:   3'- -GUCGa---GGCGgGGGCCGccCGGCGgag -5'
21374 5' -69 NC_004812.1 + 7726 0.7 0.194169
Target:  5'- gGGuCUCCGCgCCgGGCGaGGCCgggggcgcccGCCUCc -3'
miRNA:   3'- gUC-GAGGCGgGGgCCGC-CCGG----------CGGAG- -5'
21374 5' -69 NC_004812.1 + 8009 0.71 0.153819
Target:  5'- -cGCUcCCGCgaCCCCGgggggcGCGGGCCGgCCUCc -3'
miRNA:   3'- guCGA-GGCG--GGGGC------CGCCCGGC-GGAG- -5'
21374 5' -69 NC_004812.1 + 8073 0.69 0.232852
Target:  5'- -cGCgaccccgCCGCgCCCGGCGGcccgcGCCGCCc- -3'
miRNA:   3'- guCGa------GGCGgGGGCCGCC-----CGGCGGag -5'
21374 5' -69 NC_004812.1 + 8194 0.7 0.18975
Target:  5'- -cGCUCCGCCCCC-GCaGGCacgCGCCa- -3'
miRNA:   3'- guCGAGGCGGGGGcCGcCCG---GCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.