miRNA display CGI


Results 41 - 60 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21375 3' -57 NC_004812.1 + 20662 0.66 0.850384
Target:  5'- cGcCGCGuGGGaGAGcGAGGAGGuggcgGACGCc -3'
miRNA:   3'- uC-GCGCuCCC-CUC-CUCCUCU-----UUGUGu -5'
21375 3' -57 NC_004812.1 + 102941 0.66 0.850384
Target:  5'- gAGcCGCG-GGGGuGGcGGGGggGCGuCGg -3'
miRNA:   3'- -UC-GCGCuCCCCuCCuCCUCuuUGU-GU- -5'
21375 3' -57 NC_004812.1 + 88704 0.66 0.850384
Target:  5'- cGGUaCGAGGGcGAGuGGGAGAGGCuGCGc -3'
miRNA:   3'- -UCGcGCUCCC-CUCcUCCUCUUUG-UGU- -5'
21375 3' -57 NC_004812.1 + 134714 0.66 0.848013
Target:  5'- uGCGCGAaccgggacgucuucGGGGAGcuGGAGgcGCGCc -3'
miRNA:   3'- uCGCGCU--------------CCCCUCcuCCUCuuUGUGu -5'
21375 3' -57 NC_004812.1 + 115207 0.66 0.848013
Target:  5'- aAGcCGCGAGGGcGAGGGgcguucguggcguuGGGGGugguGCACc -3'
miRNA:   3'- -UC-GCGCUCCC-CUCCU--------------CCUCUu---UGUGu -5'
21375 3' -57 NC_004812.1 + 10484 0.67 0.845626
Target:  5'- -cCGCGGGGGGgagucggcucgggguAGGGGaGAGAAGC-CGg -3'
miRNA:   3'- ucGCGCUCCCC---------------UCCUC-CUCUUUGuGU- -5'
21375 3' -57 NC_004812.1 + 114741 0.67 0.842415
Target:  5'- cAGCGaCGccGGGAgccGGGGGAGguGCGCu -3'
miRNA:   3'- -UCGC-GCucCCCU---CCUCCUCuuUGUGu -5'
21375 3' -57 NC_004812.1 + 29921 0.67 0.842415
Target:  5'- uGCGCGGcccGcGGGuGGAGcGAGcAGCACGa -3'
miRNA:   3'- uCGCGCU---C-CCCuCCUC-CUCuUUGUGU- -5'
21375 3' -57 NC_004812.1 + 105628 0.67 0.842415
Target:  5'- cGCGCccGGGGGAagGGAGGccgcGGAGGCugGc -3'
miRNA:   3'- uCGCGc-UCCCCU--CCUCC----UCUUUGugU- -5'
21375 3' -57 NC_004812.1 + 81976 0.67 0.842415
Target:  5'- gAGCGcCGAGcGGGcGGGGGccgucgAGGAGCugGg -3'
miRNA:   3'- -UCGC-GCUC-CCCuCCUCC------UCUUUGugU- -5'
21375 3' -57 NC_004812.1 + 15922 0.67 0.842415
Target:  5'- cGgGCGGGGGuGGGGucgcGGGGucACGCGu -3'
miRNA:   3'- uCgCGCUCCC-CUCCu---CCUCuuUGUGU- -5'
21375 3' -57 NC_004812.1 + 22187 0.67 0.842415
Target:  5'- cGGCG-GAGcgccGGAGGAGGcGAAACAUc -3'
miRNA:   3'- -UCGCgCUCc---CCUCCUCCuCUUUGUGu -5'
21375 3' -57 NC_004812.1 + 155009 0.67 0.841608
Target:  5'- cGCGCGGGGcgcccGGAGGcggggagccgugcGGGGGGGACcCGg -3'
miRNA:   3'- uCGCGCUCC-----CCUCC-------------UCCUCUUUGuGU- -5'
21375 3' -57 NC_004812.1 + 13462 0.67 0.841608
Target:  5'- gGGgGUGGGGGGuGGcgucgcgGGGAcGAACACGu -3'
miRNA:   3'- -UCgCGCUCCCCuCC-------UCCUcUUUGUGU- -5'
21375 3' -57 NC_004812.1 + 17153 0.67 0.841608
Target:  5'- gGGC-CGGGGGGAGucguggcguccGAGGGGAcagggccAGCACc -3'
miRNA:   3'- -UCGcGCUCCCCUC-----------CUCCUCU-------UUGUGu -5'
21375 3' -57 NC_004812.1 + 29501 0.67 0.841608
Target:  5'- cGCGCGGGGcgcccGGAGGcggggagccgugcGGGGGGGACcCGg -3'
miRNA:   3'- uCGCGCUCC-----CCUCC-------------UCCUCUUUGuGU- -5'
21375 3' -57 NC_004812.1 + 153159 0.67 0.834258
Target:  5'- nGgGCGGGGGGccacgGGGAccacGGGggGCGCGg -3'
miRNA:   3'- uCgCGCUCCCC-----UCCUc---CUCuuUGUGU- -5'
21375 3' -57 NC_004812.1 + 122258 0.67 0.834258
Target:  5'- nGgGCGGGGGGccacgGGGAccacGGGggGCGCGg -3'
miRNA:   3'- uCgCGCUCCCC-----UCCUc---CUCuuUGUGU- -5'
21375 3' -57 NC_004812.1 + 44963 0.67 0.834258
Target:  5'- gAGCGcCGAGGGGGcGcGcAGGAGGccCGCGg -3'
miRNA:   3'- -UCGC-GCUCCCCU-C-C-UCCUCUuuGUGU- -5'
21375 3' -57 NC_004812.1 + 99232 0.67 0.834258
Target:  5'- cGCGuCGGcGGGGGcGGGGGccguccgggccGGAGGCACGc -3'
miRNA:   3'- uCGC-GCU-CCCCU-CCUCC-----------UCUUUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.