miRNA display CGI


Results 21 - 40 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21375 3' -57 NC_004812.1 + 5546 0.7 0.67452
Target:  5'- gGGgGCcccccaGAGGGGcGGAGGAGGAcucGCGCc -3'
miRNA:   3'- -UCgCG------CUCCCCuCCUCCUCUU---UGUGu -5'
21375 3' -57 NC_004812.1 + 5658 0.77 0.309789
Target:  5'- gGGCGCGAGGGGAGcccGcAGggGCACGg -3'
miRNA:   3'- -UCGCGCUCCCCUCcu-CcUCuuUGUGU- -5'
21375 3' -57 NC_004812.1 + 5714 0.67 0.817405
Target:  5'- gGGgGCGGGGGucugccgcGGGAGGAG-GGCGCc -3'
miRNA:   3'- -UCgCGCUCCCc-------UCCUCCUCuUUGUGu -5'
21375 3' -57 NC_004812.1 + 5845 0.75 0.362416
Target:  5'- cGGCGCGcucGGGAGGcGGGGGGAACAUg -3'
miRNA:   3'- -UCGCGCuc-CCCUCC-UCCUCUUUGUGu -5'
21375 3' -57 NC_004812.1 + 6000 0.74 0.447706
Target:  5'- aGGCGcCGGGGGGcgAGGGGaaGGGGGACGCGg -3'
miRNA:   3'- -UCGC-GCUCCCC--UCCUC--CUCUUUGUGU- -5'
21375 3' -57 NC_004812.1 + 6052 0.69 0.694674
Target:  5'- gGGCgGCGAGGGGAaGGcGGcGGAGGCGa- -3'
miRNA:   3'- -UCG-CGCUCCCCU-CCuCC-UCUUUGUgu -5'
21375 3' -57 NC_004812.1 + 6073 0.78 0.26948
Target:  5'- aGGCGCGGGGGGugggaaggaGGGAGGGGAGGgGgAg -3'
miRNA:   3'- -UCGCGCUCCCC---------UCCUCCUCUUUgUgU- -5'
21375 3' -57 NC_004812.1 + 6083 0.74 0.447706
Target:  5'- gGGgGCGAGGGGaAGGGGGucggcGGGAACGgGg -3'
miRNA:   3'- -UCgCGCUCCCC-UCCUCC-----UCUUUGUgU- -5'
21375 3' -57 NC_004812.1 + 6129 0.7 0.664387
Target:  5'- gAGgGgGAGGgGGAGGGGGGGggGguCc -3'
miRNA:   3'- -UCgCgCUCC-CCUCCUCCUCuuUguGu -5'
21375 3' -57 NC_004812.1 + 6144 0.71 0.603332
Target:  5'- cGgGCGAGGGGaAGGGGGucGGggGCcuggGCGg -3'
miRNA:   3'- uCgCGCUCCCC-UCCUCC--UCuuUG----UGU- -5'
21375 3' -57 NC_004812.1 + 6262 0.66 0.865725
Target:  5'- -cCGCGGucGGGGGGGAGcuagggccAGggGCACGg -3'
miRNA:   3'- ucGCGCU--CCCCUCCUCc-------UCuuUGUGU- -5'
21375 3' -57 NC_004812.1 + 6321 0.73 0.484809
Target:  5'- -aCGCGGGGGGccccGGGcAGGAGggGCAgCAg -3'
miRNA:   3'- ucGCGCUCCCC----UCC-UCCUCuuUGU-GU- -5'
21375 3' -57 NC_004812.1 + 6534 0.69 0.714621
Target:  5'- gGGgGCGGGGGGccGAGGGGGcugcCGCGa -3'
miRNA:   3'- -UCgCGCUCCCCucCUCCUCUuu--GUGU- -5'
21375 3' -57 NC_004812.1 + 6615 0.68 0.790895
Target:  5'- gGGUGgGuGGGGuGGGGGGGAAAa--- -3'
miRNA:   3'- -UCGCgCuCCCCuCCUCCUCUUUgugu -5'
21375 3' -57 NC_004812.1 + 6650 0.66 0.865725
Target:  5'- gGGgGUGGGGGaGAuGGGGGAG-AGCGgGg -3'
miRNA:   3'- -UCgCGCUCCC-CU-CCUCCUCuUUGUgU- -5'
21375 3' -57 NC_004812.1 + 6696 0.67 0.817405
Target:  5'- gGGCGUGuguguuGGGGGGGAgagaaGGAGAAAgGa- -3'
miRNA:   3'- -UCGCGCu-----CCCCUCCU-----CCUCUUUgUgu -5'
21375 3' -57 NC_004812.1 + 6930 0.72 0.523319
Target:  5'- cGCGgGGccGGGGuGGGGGGGAAGCGgGg -3'
miRNA:   3'- uCGCgCU--CCCCuCCUCCUCUUUGUgU- -5'
21375 3' -57 NC_004812.1 + 6969 0.73 0.494315
Target:  5'- gGGCaaGGGGGGGGGGGGGGGGAa--- -3'
miRNA:   3'- -UCGcgCUCCCCUCCUCCUCUUUgugu -5'
21375 3' -57 NC_004812.1 + 7484 0.74 0.447706
Target:  5'- --gGCGAGGGGGauGGGGGGGGGACGg- -3'
miRNA:   3'- ucgCGCUCCCCU--CCUCCUCUUUGUgu -5'
21375 3' -57 NC_004812.1 + 7516 0.66 0.865725
Target:  5'- gAGCGaaaGGaGGGAGGGGGGGcgGCGa- -3'
miRNA:   3'- -UCGCg--CUcCCCUCCUCCUCuuUGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.