miRNA display CGI


Results 1 - 20 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21375 3' -57 NC_004812.1 + 19 0.7 0.664387
Target:  5'- gGGCGCGcgcguuuucGGGGGGcGGGGGuucguucggGGggGCGCGu -3'
miRNA:   3'- -UCGCGC---------UCCCCU-CCUCC---------UCuuUGUGU- -5'
21375 3' -57 NC_004812.1 + 196 0.69 0.724495
Target:  5'- cGCGCGccgccGGGGGAGGGcccGGGucGCGCAg -3'
miRNA:   3'- uCGCGC-----UCCCCUCCUc--CUCuuUGUGU- -5'
21375 3' -57 NC_004812.1 + 256 0.75 0.362416
Target:  5'- cGCGCGGGaGGAGGGGGGGGucucccGCGCGc -3'
miRNA:   3'- uCGCGCUCcCCUCCUCCUCUu-----UGUGU- -5'
21375 3' -57 NC_004812.1 + 623 0.75 0.362416
Target:  5'- cGCGCGAGGGGAGGAcagccGGGAucgaguGCGCc -3'
miRNA:   3'- uCGCGCUCCCCUCCUc----CUCUu-----UGUGu -5'
21375 3' -57 NC_004812.1 + 677 0.67 0.798992
Target:  5'- cGGCGCGAGGGGAGcGcguccccGGGuccGGAGCu-- -3'
miRNA:   3'- -UCGCGCUCCCCUC-C-------UCCu--CUUUGugu -5'
21375 3' -57 NC_004812.1 + 728 0.69 0.73429
Target:  5'- cGGCGCGGucgccGGcGGGGGuGGGGGcGGCGCGa -3'
miRNA:   3'- -UCGCGCU-----CC-CCUCCuCCUCU-UUGUGU- -5'
21375 3' -57 NC_004812.1 + 1969 0.84 0.112299
Target:  5'- gGGCGcCGGGGGGAGGGGGGGAgggGugGCGg -3'
miRNA:   3'- -UCGC-GCUCCCCUCCUCCUCU---UugUGU- -5'
21375 3' -57 NC_004812.1 + 2047 0.76 0.331605
Target:  5'- cGGCgGCGGGGGGcgcGGGGGAGggGgCGCGc -3'
miRNA:   3'- -UCG-CGCUCCCCu--CCUCCUCuuU-GUGU- -5'
21375 3' -57 NC_004812.1 + 3081 0.67 0.817405
Target:  5'- cGCGCGucgguccaggcGGGcGGGGcGGGGGAGGCGCc -3'
miRNA:   3'- uCGCGCu----------CCC-CUCC-UCCUCUUUGUGu -5'
21375 3' -57 NC_004812.1 + 3102 0.78 0.26948
Target:  5'- gGGgGgGAGGGGAGGGGGAGGGAg--- -3'
miRNA:   3'- -UCgCgCUCCCCUCCUCCUCUUUgugu -5'
21375 3' -57 NC_004812.1 + 4631 0.68 0.790895
Target:  5'- aGGgGCGGGGGGGcGGgacgcccgcgcgGGGAGggGCuCGc -3'
miRNA:   3'- -UCgCGCUCCCCU-CC------------UCCUCuuUGuGU- -5'
21375 3' -57 NC_004812.1 + 4775 0.8 0.211833
Target:  5'- gGGCGCGguGGGGGAGGGGGcGggGCGa- -3'
miRNA:   3'- -UCGCGC--UCCCCUCCUCCuCuuUGUgu -5'
21375 3' -57 NC_004812.1 + 4850 0.66 0.864977
Target:  5'- uGCGgGGccGGGGAGGGGccgcggcccgcgcGAGAAACAa- -3'
miRNA:   3'- uCGCgCU--CCCCUCCUC-------------CUCUUUGUgu -5'
21375 3' -57 NC_004812.1 + 4986 0.67 0.825919
Target:  5'- cGCGCGGGGGGccgugcgccgcaGGGcGGGcGGggGCgGCAg -3'
miRNA:   3'- uCGCGCUCCCC------------UCC-UCC-UCuuUG-UGU- -5'
21375 3' -57 NC_004812.1 + 5127 0.67 0.799885
Target:  5'- gGGgGCGGGcGcGGAGGcGGGAGGGcCGCGg -3'
miRNA:   3'- -UCgCGCUC-C-CCUCC-UCCUCUUuGUGU- -5'
21375 3' -57 NC_004812.1 + 5198 0.72 0.545989
Target:  5'- aGGgGCGGGGGcuccccagaagcagaGAGGggcgggggcucccGGGAGAAGCACAa -3'
miRNA:   3'- -UCgCGCUCCC---------------CUCC-------------UCCUCUUUGUGU- -5'
21375 3' -57 NC_004812.1 + 5281 0.75 0.37855
Target:  5'- gAG-GCGGGGGGAggcccgGGAGGAGAAGCcCGa -3'
miRNA:   3'- -UCgCGCUCCCCU------CCUCCUCUUUGuGU- -5'
21375 3' -57 NC_004812.1 + 5341 0.78 0.257016
Target:  5'- gAG-GCGGGGGGAGGcccGGGAGAGGCgGCAg -3'
miRNA:   3'- -UCgCGCUCCCCUCC---UCCUCUUUG-UGU- -5'
21375 3' -57 NC_004812.1 + 5387 0.73 0.503904
Target:  5'- cGGCGgGAGGGGGGucGGGGucucccAGGGACGCGg -3'
miRNA:   3'- -UCGCgCUCCCCUC--CUCC------UCUUUGUGU- -5'
21375 3' -57 NC_004812.1 + 5483 0.72 0.562946
Target:  5'- gGGgGCGAGGGucacccacGGGAGGAGGAcgccgggcgccGCGCAg -3'
miRNA:   3'- -UCgCGCUCCCc-------UCCUCCUCUU-----------UGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.