Results 1 - 20 of 337 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21375 | 3' | -57 | NC_004812.1 | + | 148481 | 0.78 | 0.245027 |
Target: 5'- uGCGCGGGGGaGGGGAGGGcGAGggguGCGCGg -3' miRNA: 3'- uCGCGCUCCC-CUCCUCCU-CUU----UGUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 57256 | 0.81 | 0.160991 |
Target: 5'- gGGCGCuGGGGGGGGGGGGGGcGACAa- -3' miRNA: 3'- -UCGCG-CUCCCCUCCUCCUCuUUGUgu -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 70880 | 0.81 | 0.178067 |
Target: 5'- uGCGCGGGGGGGGcGGGGAGGGggcggggaucucGCGCGg -3' miRNA: 3'- uCGCGCUCCCCUC-CUCCUCUU------------UGUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 137990 | 0.8 | 0.187195 |
Target: 5'- gGGgGgGGGGGGGGGGGGGGGAGCGgGg -3' miRNA: 3'- -UCgCgCUCCCCUCCUCCUCUUUGUgU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 154772 | 0.8 | 0.190486 |
Target: 5'- uGCGCggggaGAGGGGAGGAGGGGGGaggagaggcgaggcGCGCAg -3' miRNA: 3'- uCGCG-----CUCCCCUCCUCCUCUU--------------UGUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 155874 | 0.8 | 0.206691 |
Target: 5'- cGCGCGcGGcGGGGGAGGGGAGGgGCGg -3' miRNA: 3'- uCGCGCuCC-CCUCCUCCUCUUUgUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 100116 | 0.8 | 0.211833 |
Target: 5'- cGgGCGGGGGaGGGGAGGGGAGGCGu- -3' miRNA: 3'- uCgCGCUCCC-CUCCUCCUCUUUGUgu -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 4775 | 0.8 | 0.211833 |
Target: 5'- gGGCGCGguGGGGGAGGGGGcGggGCGa- -3' miRNA: 3'- -UCGCGC--UCCCCUCCUCCuCuuUGUgu -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 156182 | 0.79 | 0.239209 |
Target: 5'- cGCGCGAggaaGGGGAGGGGGGGAGggggccGCugGg -3' miRNA: 3'- uCGCGCU----CCCCUCCUCCUCUU------UGugU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 127477 | 0.82 | 0.156959 |
Target: 5'- gGGCGcCGGGGGGAGGGGGGGAGGgGu- -3' miRNA: 3'- -UCGC-GCUCCCCUCCUCCUCUUUgUgu -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 118499 | 0.82 | 0.156959 |
Target: 5'- aGGCgagGCGAGGGGAGGGGGAGGAGgGa- -3' miRNA: 3'- -UCG---CGCUCCCCUCCUCCUCUUUgUgu -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 54721 | 0.82 | 0.156959 |
Target: 5'- aGGgGgGAGGGGAGGGGGAGGgggccGGCGCGg -3' miRNA: 3'- -UCgCgCUCCCCUCCUCCUCU-----UUGUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 122555 | 0.87 | 0.071692 |
Target: 5'- gGGCGCGGGGGGGGGcGGAGGggAGCGCGg -3' miRNA: 3'- -UCGCGCUCCCCUCCuCCUCU--UUGUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 155549 | 0.84 | 0.103557 |
Target: 5'- gGGCGgGAGGGGcgggggaGGGGGGAGggGCGCGc -3' miRNA: 3'- -UCGCgCUCCCC-------UCCUCCUCuuUGUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 116223 | 0.83 | 0.124599 |
Target: 5'- gGGCGCGcaaauggggggGGGGGGGGGGGGGGAACAgAa -3' miRNA: 3'- -UCGCGC-----------UCCCCUCCUCCUCUUUGUgU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 154946 | 0.82 | 0.137079 |
Target: 5'- cGGaCGCGGGGGGGGGGGGAGGGgggacgggcgggccGCGCGg -3' miRNA: 3'- -UC-GCGCUCCCCUCCUCCUCUU--------------UGUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 155243 | 0.82 | 0.13814 |
Target: 5'- uGCGCGAGGGcGGGccGAGGGGggGCGCGg -3' miRNA: 3'- uCGCGCUCCC-CUC--CUCCUCuuUGUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 47837 | 0.82 | 0.149168 |
Target: 5'- aAGgGCGguGGGGGAGGGGGAGAGGgGCGc -3' miRNA: 3'- -UCgCGC--UCCCCUCCUCCUCUUUgUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 7952 | 0.82 | 0.153019 |
Target: 5'- gGGCGCGuccGGGGGGGGccGAGAGACGCGg -3' miRNA: 3'- -UCGCGC---UCCCCUCCucCUCUUUGUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 72326 | 0.82 | 0.156561 |
Target: 5'- gGGCGCGGccgggcgggccgcGGGGGGGAGGGGggGCGgGg -3' miRNA: 3'- -UCGCGCU-------------CCCCUCCUCCUCuuUGUgU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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