Results 1 - 20 of 337 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21375 | 3' | -57 | NC_004812.1 | + | 127903 | 0.65 | 0.885107 |
Target: 5'- cGGCGCGGGGcGGcggucgcgaaauccAGGAaGGGcacgcGAAGCGCGu -3' miRNA: 3'- -UCGCGCUCC-CC--------------UCCU-CCU-----CUUUGUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 6650 | 0.66 | 0.865725 |
Target: 5'- gGGgGUGGGGGaGAuGGGGGAG-AGCGgGg -3' miRNA: 3'- -UCgCGCUCCC-CU-CCUCCUCuUUGUgU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 102941 | 0.66 | 0.850384 |
Target: 5'- gAGcCGCG-GGGGuGGcGGGGggGCGuCGg -3' miRNA: 3'- -UC-GCGCuCCCCuCCuCCUCuuUGU-GU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 154735 | 0.66 | 0.865725 |
Target: 5'- gGGgGCGGGcGGGGGucgcGGAGGAGCGg- -3' miRNA: 3'- -UCgCGCUCcCCUCCu---CCUCUUUGUgu -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 115207 | 0.66 | 0.848013 |
Target: 5'- aAGcCGCGAGGGcGAGGGgcguucguggcguuGGGGGugguGCACc -3' miRNA: 3'- -UC-GCGCUCCC-CUCCU--------------CCUCUu---UGUGu -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 56602 | 0.66 | 0.858155 |
Target: 5'- cGCGCGGGGGGGuGAuGAG-GugGCAg -3' miRNA: 3'- uCGCGCUCCCCUcCUcCUCuUugUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 122507 | 0.66 | 0.858155 |
Target: 5'- uGCG-GAGGGGcGGAGaGAGAGAgAa- -3' miRNA: 3'- uCGCgCUCCCCuCCUC-CUCUUUgUgu -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 7516 | 0.66 | 0.865725 |
Target: 5'- gAGCGaaaGGaGGGAGGGGGGGcgGCGa- -3' miRNA: 3'- -UCGCg--CUcCCCUCCUCCUCuuUGUgu -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 121873 | 0.66 | 0.865725 |
Target: 5'- cGGCGCaGAGGGGcGGGgccuGGGGcGggGcCGCAg -3' miRNA: 3'- -UCGCG-CUCCCC-UCC----UCCU-CuuU-GUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 146652 | 0.66 | 0.873086 |
Target: 5'- uGUGgGuGGGGAGGGgagcguuggaccGGAGGcaagAGCACAu -3' miRNA: 3'- uCGCgCuCCCCUCCU------------CCUCU----UUGUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 80614 | 0.66 | 0.858155 |
Target: 5'- gGGCucgGUGGGGGGuccgcGGuGGAGAGGgGCGg -3' miRNA: 3'- -UCG---CGCUCCCCu----CCuCCUCUUUgUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 27801 | 0.66 | 0.873086 |
Target: 5'- gAGgGCG-GGGccGGGGGGGGAGCGgGg -3' miRNA: 3'- -UCgCGCuCCCcuCCUCCUCUUUGUgU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 39852 | 0.66 | 0.858155 |
Target: 5'- cGGUGCGGGGGGccGGGGGcuccgccauGGCGCGu -3' miRNA: 3'- -UCGCGCUCCCCu-CCUCCucu------UUGUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 35659 | 0.66 | 0.858155 |
Target: 5'- cGCGCGGGGGucGGGGGcucuGugGCGCc -3' miRNA: 3'- uCGCGCUCCCcuCCUCCu---CuuUGUGu -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 6262 | 0.66 | 0.865725 |
Target: 5'- -cCGCGGucGGGGGGGAGcuagggccAGggGCACGg -3' miRNA: 3'- ucGCGCU--CCCCUCCUCc-------UCuuUGUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 151081 | 0.66 | 0.865725 |
Target: 5'- cGaCGaCGAcGGGGAGGAcGGcGGGGACGCc -3' miRNA: 3'- uC-GC-GCU-CCCCUCCU-CC-UCUUUGUGu -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 88704 | 0.66 | 0.850384 |
Target: 5'- cGGUaCGAGGGcGAGuGGGAGAGGCuGCGc -3' miRNA: 3'- -UCGcGCUCCC-CUCcUCCUCUUUG-UGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 11439 | 0.66 | 0.864977 |
Target: 5'- cGGCGgGAGggugccgggagccGGGAGGGGGAaaggaaGAAACGgAa -3' miRNA: 3'- -UCGCgCUC-------------CCCUCCUCCU------CUUUGUgU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 71124 | 0.66 | 0.865725 |
Target: 5'- aGGCGCGGGcgccucGGGGGuucGGGGgcGCGCGa -3' miRNA: 3'- -UCGCGCUCc-----CCUCCu--CCUCuuUGUGU- -5' |
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21375 | 3' | -57 | NC_004812.1 | + | 4850 | 0.66 | 0.864977 |
Target: 5'- uGCGgGGccGGGGAGGGGccgcggcccgcgcGAGAAACAa- -3' miRNA: 3'- uCGCgCU--CCCCUCCUC-------------CUCUUUGUgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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