miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21376 3' -59 NC_004812.1 + 64853 0.69 0.599003
Target:  5'- cGCCCacaUCUCgCGGGCCuCUUCCUCc -3'
miRNA:   3'- -CGGGaagAGAGgGUCUGG-GGAGGAGa -5'
21376 3' -59 NC_004812.1 + 111882 0.7 0.589038
Target:  5'- aGCCCcUCgugCUCCCgGGACCCCcgCCg-- -3'
miRNA:   3'- -CGGGaAGa--GAGGG-UCUGGGGa-GGaga -5'
21376 3' -59 NC_004812.1 + 29654 0.7 0.579102
Target:  5'- uCCCUUCUCUCCCccGCCCaUCCcCg -3'
miRNA:   3'- cGGGAAGAGAGGGucUGGGgAGGaGa -5'
21376 3' -59 NC_004812.1 + 54336 0.7 0.579102
Target:  5'- cGCCCUaCccaUCCCuccCCCCUCCUCg -3'
miRNA:   3'- -CGGGAaGag-AGGGucuGGGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 90110 0.7 0.579102
Target:  5'- cGCCgcgCUCgCCCAGACgCCCUCCg-- -3'
miRNA:   3'- -CGGgaaGAGaGGGUCUG-GGGAGGaga -5'
21376 3' -59 NC_004812.1 + 89341 0.7 0.579102
Target:  5'- gGCCCgacgCggagCUCGGGCCCCUCCUg- -3'
miRNA:   3'- -CGGGaagaGa---GGGUCUGGGGAGGAga -5'
21376 3' -59 NC_004812.1 + 72537 0.7 0.569203
Target:  5'- cCCgCUUCggugagCCCGGGCCCCUCCg-- -3'
miRNA:   3'- cGG-GAAGaga---GGGUCUGGGGAGGaga -5'
21376 3' -59 NC_004812.1 + 29663 0.7 0.539784
Target:  5'- uGCCCggccCUCgcggCCCcGGCCCCUCCcCg -3'
miRNA:   3'- -CGGGaa--GAGa---GGGuCUGGGGAGGaGa -5'
21376 3' -59 NC_004812.1 + 155171 0.7 0.539784
Target:  5'- uGCCCggccCUCgcggCCCcGGCCCCUCCcCg -3'
miRNA:   3'- -CGGGaa--GAGa---GGGuCUGGGGAGGaGa -5'
21376 3' -59 NC_004812.1 + 45825 0.7 0.539784
Target:  5'- aGCCCgacgagCggCUCCCGGAa-CCUCCUCg -3'
miRNA:   3'- -CGGGaa----Ga-GAGGGUCUggGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 120353 0.71 0.51854
Target:  5'- aGCCCgagucugccgcCUCUCCCGGGCCUCcccccgCCUCc -3'
miRNA:   3'- -CGGGaa---------GAGAGGGUCUGGGGa-----GGAGa -5'
21376 3' -59 NC_004812.1 + 151254 0.71 0.51854
Target:  5'- aGCCCgagucugccgcCUCUCCCGGGCCUCcccccgCCUCc -3'
miRNA:   3'- -CGGGaa---------GAGAGGGUCUGGGGa-----GGAGa -5'
21376 3' -59 NC_004812.1 + 3829 0.71 0.510896
Target:  5'- gGCCCcg--C-CCCAGGCCCCgccCCUCUg -3'
miRNA:   3'- -CGGGaagaGaGGGUCUGGGGa--GGAGA- -5'
21376 3' -59 NC_004812.1 + 34730 0.71 0.510896
Target:  5'- gGCCCcg--C-CCCAGGCCCCgccCCUCUg -3'
miRNA:   3'- -CGGGaagaGaGGGUCUGGGGa--GGAGA- -5'
21376 3' -59 NC_004812.1 + 55742 0.71 0.492
Target:  5'- cGCCCUcccccgcCUCcCCCGcGGCCCCgUCCUCg -3'
miRNA:   3'- -CGGGAa------GAGaGGGU-CUGGGG-AGGAGa -5'
21376 3' -59 NC_004812.1 + 90520 0.72 0.455223
Target:  5'- uGCUCUUCUa-CCCGGACCCCaCCUa- -3'
miRNA:   3'- -CGGGAAGAgaGGGUCUGGGGaGGAga -5'
21376 3' -59 NC_004812.1 + 38210 0.72 0.455223
Target:  5'- cGCCCgUCg--CCCGGcCCUCUCCUCg -3'
miRNA:   3'- -CGGGaAGagaGGGUCuGGGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 7309 0.72 0.455223
Target:  5'- cGCCCgUCg--CCCGGcCCUCUCCUCg -3'
miRNA:   3'- -CGGGaAGagaGGGUCuGGGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 55683 0.72 0.437398
Target:  5'- gGCCCagCUCUCC--GGCCCgUCCUCg -3'
miRNA:   3'- -CGGGaaGAGAGGguCUGGGgAGGAGa -5'
21376 3' -59 NC_004812.1 + 150512 0.72 0.437398
Target:  5'- uCCUUUCUCUCCCcucCCCCUCCcCUc -3'
miRNA:   3'- cGGGAAGAGAGGGucuGGGGAGGaGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.