miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21376 3' -59 NC_004812.1 + 146099 0.68 0.688882
Target:  5'- cGCCCccgccuccggcUUCUCUCCCcuACCCCgagCCg-- -3'
miRNA:   3'- -CGGG-----------AAGAGAGGGucUGGGGa--GGaga -5'
21376 3' -59 NC_004812.1 + 135154 0.68 0.688882
Target:  5'- cGCCCagUUCUCgCAGgucACCggCCUCCUCUg -3'
miRNA:   3'- -CGGGaaGAGAGgGUC---UGG--GGAGGAGA- -5'
21376 3' -59 NC_004812.1 + 104334 0.68 0.688882
Target:  5'- -aCCUUCUCcgCCCAucCCCCgCCUCc -3'
miRNA:   3'- cgGGAAGAGa-GGGUcuGGGGaGGAGa -5'
21376 3' -59 NC_004812.1 + 51656 0.68 0.674993
Target:  5'- aGCCCcUCUC-CCCGccgcGACCCCgauccaaagggggCCUCg -3'
miRNA:   3'- -CGGGaAGAGaGGGU----CUGGGGa------------GGAGa -5'
21376 3' -59 NC_004812.1 + 103170 0.68 0.66902
Target:  5'- cGgCUUUCUCaucgcguaCCAG-CCCCUCCUCa -3'
miRNA:   3'- -CgGGAAGAGag------GGUCuGGGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 74826 0.68 0.659041
Target:  5'- cGCCCacacCUCgUCCCAcucGGCCCCgcggCCUCc -3'
miRNA:   3'- -CGGGaa--GAG-AGGGU---CUGGGGa---GGAGa -5'
21376 3' -59 NC_004812.1 + 13089 0.68 0.659041
Target:  5'- cGCCCccaugcgCUCguacgCCCGGGCCCg-CCUCg -3'
miRNA:   3'- -CGGGaa-----GAGa----GGGUCUGGGgaGGAGa -5'
21376 3' -59 NC_004812.1 + 112064 0.68 0.649042
Target:  5'- gGCCCguccgUCgagCCCGGgccacgcccACCCCUCUUCUg -3'
miRNA:   3'- -CGGGa----AGagaGGGUC---------UGGGGAGGAGA- -5'
21376 3' -59 NC_004812.1 + 41414 0.68 0.649042
Target:  5'- cGCCCUcgcggCUUUCCCGGcCCCC-CCg-- -3'
miRNA:   3'- -CGGGAa----GAGAGGGUCuGGGGaGGaga -5'
21376 3' -59 NC_004812.1 + 154309 0.69 0.63903
Target:  5'- cGCCCUgCUCgagCCGGACCCCgacgCCg-- -3'
miRNA:   3'- -CGGGAaGAGag-GGUCUGGGGa---GGaga -5'
21376 3' -59 NC_004812.1 + 28801 0.69 0.63903
Target:  5'- cGCCCUgCUCgagCCGGACCCCgacgCCg-- -3'
miRNA:   3'- -CGGGAaGAGag-GGUCUGGGGa---GGaga -5'
21376 3' -59 NC_004812.1 + 84465 0.69 0.63903
Target:  5'- aGCCCgcCUC-CCCcGGCCCCgcacCCUCc -3'
miRNA:   3'- -CGGGaaGAGaGGGuCUGGGGa---GGAGa -5'
21376 3' -59 NC_004812.1 + 7090 0.69 0.636025
Target:  5'- uCCCUuuuuuuccucucugUCUCUCCCccucGGACCCCcaccgccCCUCUc -3'
miRNA:   3'- cGGGA--------------AGAGAGGG----UCUGGGGa------GGAGA- -5'
21376 3' -59 NC_004812.1 + 37991 0.69 0.636025
Target:  5'- uCCCUuuuuuuccucucugUCUCUCCCccucGGACCCCcaccgccCCUCUc -3'
miRNA:   3'- cGGGA--------------AGAGAGGG----UCUGGGGa------GGAGA- -5'
21376 3' -59 NC_004812.1 + 110094 0.69 0.629013
Target:  5'- gGCCCUgCUCcCCCAGAcgacCCCCgggaccaaCCUCg -3'
miRNA:   3'- -CGGGAaGAGaGGGUCU----GGGGa-------GGAGa -5'
21376 3' -59 NC_004812.1 + 1822 0.69 0.608992
Target:  5'- cGCCUcgcCUCUCCUcc-CCCCUCCUCc -3'
miRNA:   3'- -CGGGaa-GAGAGGGucuGGGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 50042 0.69 0.608992
Target:  5'- cGCCCgg----CCCGGGCgCCUCCUCc -3'
miRNA:   3'- -CGGGaagagaGGGUCUGgGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 127330 0.69 0.608992
Target:  5'- cGCCUcgcCUCUCCUcc-CCCCUCCUCc -3'
miRNA:   3'- -CGGGaa-GAGAGGGucuGGGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 3195 0.69 0.599003
Target:  5'- cGCCggCUUCUCUCUCucuccGCCCCUCCg-- -3'
miRNA:   3'- -CGG--GAAGAGAGGGuc---UGGGGAGGaga -5'
21376 3' -59 NC_004812.1 + 64853 0.69 0.599003
Target:  5'- cGCCCacaUCUCgCGGGCCuCUUCCUCc -3'
miRNA:   3'- -CGGGaagAGAGgGUCUGG-GGAGGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.