miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21376 3' -59 NC_004812.1 + 126007 0.67 0.756532
Target:  5'- cCCCUUCUCccggccCCCGGuCCCCgcugUCUCc -3'
miRNA:   3'- cGGGAAGAGa-----GGGUCuGGGGa---GGAGa -5'
21376 3' -59 NC_004812.1 + 499 0.67 0.756532
Target:  5'- cCCCUUCUCccggccCCCGGuCCCCgcugUCUCc -3'
miRNA:   3'- cGGGAAGAGa-----GGGUCuGGGGa---GGAGa -5'
21376 3' -59 NC_004812.1 + 126563 0.67 0.747114
Target:  5'- cGCCCcUCccccCUCCCccGCCCCUCC-Cg -3'
miRNA:   3'- -CGGGaAGa---GAGGGucUGGGGAGGaGa -5'
21376 3' -59 NC_004812.1 + 50557 0.67 0.747114
Target:  5'- cGCCagUCUCcCUCGGACCCCUgCgUCg -3'
miRNA:   3'- -CGGgaAGAGaGGGUCUGGGGA-GgAGa -5'
21376 3' -59 NC_004812.1 + 1054 0.67 0.747114
Target:  5'- cGCCCcUCccccCUCCCccGCCCCUCC-Cg -3'
miRNA:   3'- -CGGGaAGa---GAGGGucUGGGGAGGaGa -5'
21376 3' -59 NC_004812.1 + 57673 0.67 0.7376
Target:  5'- gGCCCcgggUCUCUUCCGGGCgCCggCCg-- -3'
miRNA:   3'- -CGGGa---AGAGAGGGUCUGgGGa-GGaga -5'
21376 3' -59 NC_004812.1 + 116121 0.67 0.7376
Target:  5'- cGCCCgccCUCggggCCCGGGCCCCgagggcgggCCa-- -3'
miRNA:   3'- -CGGGaa-GAGa---GGGUCUGGGGa--------GGaga -5'
21376 3' -59 NC_004812.1 + 123922 0.67 0.736644
Target:  5'- cGCCCgcgg-UCCCGGGCCggcccggCCUCCUCc -3'
miRNA:   3'- -CGGGaagagAGGGUCUGG-------GGAGGAGa -5'
21376 3' -59 NC_004812.1 + 135436 0.67 0.727998
Target:  5'- cGCCCUcCgcgCCCAG-CgCCUCCUCc -3'
miRNA:   3'- -CGGGAaGagaGGGUCuGgGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 126188 0.67 0.718316
Target:  5'- cCCCggCgCUCCCGcGGCCcggCCUCCUCg -3'
miRNA:   3'- cGGGaaGaGAGGGU-CUGG---GGAGGAGa -5'
21376 3' -59 NC_004812.1 + 34944 0.67 0.718316
Target:  5'- cGCCCgccgCUCcgccuccgCCgCAGGCCgCUCCUCc -3'
miRNA:   3'- -CGGGaa--GAGa-------GG-GUCUGGgGAGGAGa -5'
21376 3' -59 NC_004812.1 + 680 0.67 0.718316
Target:  5'- cCCCggCgCUCCCGcGGCCcggCCUCCUCg -3'
miRNA:   3'- cGGGaaGaGAGGGU-CUGG---GGAGGAGa -5'
21376 3' -59 NC_004812.1 + 4043 0.67 0.718316
Target:  5'- cGCCCgccgCUCcgccuccgCCgCAGGCCgCUCCUCc -3'
miRNA:   3'- -CGGGaa--GAGa-------GG-GUCUGGgGAGGAGa -5'
21376 3' -59 NC_004812.1 + 131239 0.67 0.717344
Target:  5'- cCCCUgugucUCUCUCCgCAcacacgcgccuccGGCCCCucUCCUCUc -3'
miRNA:   3'- cGGGA-----AGAGAGG-GU-------------CUGGGG--AGGAGA- -5'
21376 3' -59 NC_004812.1 + 5731 0.67 0.717344
Target:  5'- cCCCUgugucUCUCUCCgCAcacacgcgccuccGGCCCCucUCCUCUc -3'
miRNA:   3'- cGGGA-----AGAGAGG-GU-------------CUGGGG--AGGAGA- -5'
21376 3' -59 NC_004812.1 + 406 0.67 0.712473
Target:  5'- cGUCCcUCUC-CCCAGcgGCCCCcucccccccuccccuUCCUCg -3'
miRNA:   3'- -CGGGaAGAGaGGGUC--UGGGG---------------AGGAGa -5'
21376 3' -59 NC_004812.1 + 125914 0.67 0.712473
Target:  5'- cGUCCcUCUC-CCCAGcgGCCCCcucccccccuccccuUCCUCg -3'
miRNA:   3'- -CGGGaAGAGaGGGUC--UGGGG---------------AGGAGa -5'
21376 3' -59 NC_004812.1 + 95247 0.68 0.702683
Target:  5'- cGCCCUcucggauauacgcuuUCuuUCUCCgCAGcACCCgUCCUCc -3'
miRNA:   3'- -CGGGA---------------AG--AGAGG-GUC-UGGGgAGGAGa -5'
21376 3' -59 NC_004812.1 + 78625 0.68 0.69875
Target:  5'- gGCuCCUggagcgCUCgaaggccggCCCGGACaCCCUCUUCg -3'
miRNA:   3'- -CG-GGAa-----GAGa--------GGGUCUG-GGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 61560 0.68 0.69875
Target:  5'- aGCCg--CUCgcgCCgGGACCCC-CCUCg -3'
miRNA:   3'- -CGGgaaGAGa--GGgUCUGGGGaGGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.