miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21376 3' -59 NC_004812.1 + 118269 1.09 0.001603
Target:  5'- cGCCCUUCUCUCCCAGACCCCUCCUCUu -3'
miRNA:   3'- -CGGGAAGAGAGGGUCUGGGGAGGAGA- -5'
21376 3' -59 NC_004812.1 + 149170 1.09 0.001603
Target:  5'- cGCCCUUCUCUCCCAGACCCCUCCUCUu -3'
miRNA:   3'- -CGGGAAGAGAGGGUCUGGGGAGGAGA- -5'
21376 3' -59 NC_004812.1 + 63106 0.77 0.21908
Target:  5'- cUCCUUCUCUCCCGGcCgcucuccgCCCUCCUCg -3'
miRNA:   3'- cGGGAAGAGAGGGUCuG--------GGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 16957 0.73 0.394661
Target:  5'- cGCCaucCUCUCCCcuGCCCCUCuCUCg -3'
miRNA:   3'- -CGGgaaGAGAGGGucUGGGGAG-GAGa -5'
21376 3' -59 NC_004812.1 + 153288 0.73 0.411432
Target:  5'- gGCCCcUCgggcccCUCCCcuGGCUCCUCCUCg -3'
miRNA:   3'- -CGGGaAGa-----GAGGGu-CUGGGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 122387 0.73 0.411432
Target:  5'- gGCCCcUCgggcccCUCCCcuGGCUCCUCCUCg -3'
miRNA:   3'- -CGGGaAGa-----GAGGGu-CUGGGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 29627 0.73 0.419982
Target:  5'- -aCCUUCUCUCCCuccucCCCCUCCcCa -3'
miRNA:   3'- cgGGAAGAGAGGGucu--GGGGAGGaGa -5'
21376 3' -59 NC_004812.1 + 6163 0.72 0.428638
Target:  5'- cGCCC-UCUCUCCCc-GCCCCUgucgUCUCUc -3'
miRNA:   3'- -CGGGaAGAGAGGGucUGGGGA----GGAGA- -5'
21376 3' -59 NC_004812.1 + 131672 0.72 0.428638
Target:  5'- cGCCC-UCUCUCCCc-GCCCCUgucgUCUCUc -3'
miRNA:   3'- -CGGGaAGAGAGGGucUGGGGA----GGAGA- -5'
21376 3' -59 NC_004812.1 + 25003 0.72 0.437398
Target:  5'- uCCUUUCUCUCCCcucCCCCUCCcCUc -3'
miRNA:   3'- cGGGAAGAGAGGGucuGGGGAGGaGA- -5'
21376 3' -59 NC_004812.1 + 55683 0.72 0.437398
Target:  5'- gGCCCagCUCUCC--GGCCCgUCCUCg -3'
miRNA:   3'- -CGGGaaGAGAGGguCUGGGgAGGAGa -5'
21376 3' -59 NC_004812.1 + 150512 0.72 0.437398
Target:  5'- uCCUUUCUCUCCCcucCCCCUCCcCUc -3'
miRNA:   3'- cGGGAAGAGAGGGucuGGGGAGGaGA- -5'
21376 3' -59 NC_004812.1 + 38210 0.72 0.455223
Target:  5'- cGCCCgUCg--CCCGGcCCUCUCCUCg -3'
miRNA:   3'- -CGGGaAGagaGGGUCuGGGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 90520 0.72 0.455223
Target:  5'- uGCUCUUCUa-CCCGGACCCCaCCUa- -3'
miRNA:   3'- -CGGGAAGAgaGGGUCUGGGGaGGAga -5'
21376 3' -59 NC_004812.1 + 7309 0.72 0.455223
Target:  5'- cGCCCgUCg--CCCGGcCCUCUCCUCg -3'
miRNA:   3'- -CGGGaAGagaGGGUCuGGGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 55742 0.71 0.492
Target:  5'- cGCCCUcccccgcCUCcCCCGcGGCCCCgUCCUCg -3'
miRNA:   3'- -CGGGAa------GAGaGGGU-CUGGGG-AGGAGa -5'
21376 3' -59 NC_004812.1 + 3829 0.71 0.510896
Target:  5'- gGCCCcg--C-CCCAGGCCCCgccCCUCUg -3'
miRNA:   3'- -CGGGaagaGaGGGUCUGGGGa--GGAGA- -5'
21376 3' -59 NC_004812.1 + 34730 0.71 0.510896
Target:  5'- gGCCCcg--C-CCCAGGCCCCgccCCUCUg -3'
miRNA:   3'- -CGGGaagaGaGGGUCUGGGGa--GGAGA- -5'
21376 3' -59 NC_004812.1 + 151254 0.71 0.51854
Target:  5'- aGCCCgagucugccgcCUCUCCCGGGCCUCcccccgCCUCc -3'
miRNA:   3'- -CGGGaa---------GAGAGGGUCUGGGGa-----GGAGa -5'
21376 3' -59 NC_004812.1 + 120353 0.71 0.51854
Target:  5'- aGCCCgagucugccgcCUCUCCCGGGCCUCcccccgCCUCc -3'
miRNA:   3'- -CGGGaa---------GAGAGGGUCUGGGGa-----GGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.