miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21376 3' -59 NC_004812.1 + 104334 0.68 0.688882
Target:  5'- -aCCUUCUCcgCCCAucCCCCgCCUCc -3'
miRNA:   3'- cgGGAAGAGa-GGGUcuGGGGaGGAGa -5'
21376 3' -59 NC_004812.1 + 29654 0.7 0.579102
Target:  5'- uCCCUUCUCUCCCccGCCCaUCCcCg -3'
miRNA:   3'- cGGGAAGAGAGGGucUGGGgAGGaGa -5'
21376 3' -59 NC_004812.1 + 3195 0.69 0.599003
Target:  5'- cGCCggCUUCUCUCUCucuccGCCCCUCCg-- -3'
miRNA:   3'- -CGG--GAAGAGAGGGuc---UGGGGAGGaga -5'
21376 3' -59 NC_004812.1 + 64853 0.69 0.599003
Target:  5'- cGCCCacaUCUCgCGGGCCuCUUCCUCc -3'
miRNA:   3'- -CGGGaagAGAGgGUCUGG-GGAGGAGa -5'
21376 3' -59 NC_004812.1 + 127330 0.69 0.608992
Target:  5'- cGCCUcgcCUCUCCUcc-CCCCUCCUCc -3'
miRNA:   3'- -CGGGaa-GAGAGGGucuGGGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 7090 0.69 0.636025
Target:  5'- uCCCUuuuuuuccucucugUCUCUCCCccucGGACCCCcaccgccCCUCUc -3'
miRNA:   3'- cGGGA--------------AGAGAGGG----UCUGGGGa------GGAGA- -5'
21376 3' -59 NC_004812.1 + 154309 0.69 0.63903
Target:  5'- cGCCCUgCUCgagCCGGACCCCgacgCCg-- -3'
miRNA:   3'- -CGGGAaGAGag-GGUCUGGGGa---GGaga -5'
21376 3' -59 NC_004812.1 + 13089 0.68 0.659041
Target:  5'- cGCCCccaugcgCUCguacgCCCGGGCCCg-CCUCg -3'
miRNA:   3'- -CGGGaa-----GAGa----GGGUCUGGGgaGGAGa -5'
21376 3' -59 NC_004812.1 + 74826 0.68 0.659041
Target:  5'- cGCCCacacCUCgUCCCAcucGGCCCCgcggCCUCc -3'
miRNA:   3'- -CGGGaa--GAG-AGGGU---CUGGGGa---GGAGa -5'
21376 3' -59 NC_004812.1 + 155171 0.7 0.539784
Target:  5'- uGCCCggccCUCgcggCCCcGGCCCCUCCcCg -3'
miRNA:   3'- -CGGGaa--GAGa---GGGuCUGGGGAGGaGa -5'
21376 3' -59 NC_004812.1 + 45825 0.7 0.539784
Target:  5'- aGCCCgacgagCggCUCCCGGAa-CCUCCUCg -3'
miRNA:   3'- -CGGGaa----Ga-GAGGGUCUggGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 120353 0.71 0.51854
Target:  5'- aGCCCgagucugccgcCUCUCCCGGGCCUCcccccgCCUCc -3'
miRNA:   3'- -CGGGaa---------GAGAGGGUCUGGGGa-----GGAGa -5'
21376 3' -59 NC_004812.1 + 122387 0.73 0.411432
Target:  5'- gGCCCcUCgggcccCUCCCcuGGCUCCUCCUCg -3'
miRNA:   3'- -CGGGaAGa-----GAGGGu-CUGGGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 29627 0.73 0.419982
Target:  5'- -aCCUUCUCUCCCuccucCCCCUCCcCa -3'
miRNA:   3'- cgGGAAGAGAGGGucu--GGGGAGGaGa -5'
21376 3' -59 NC_004812.1 + 131672 0.72 0.428638
Target:  5'- cGCCC-UCUCUCCCc-GCCCCUgucgUCUCUc -3'
miRNA:   3'- -CGGGaAGAGAGGGucUGGGGA----GGAGA- -5'
21376 3' -59 NC_004812.1 + 150512 0.72 0.437398
Target:  5'- uCCUUUCUCUCCCcucCCCCUCCcCUc -3'
miRNA:   3'- cGGGAAGAGAGGGucuGGGGAGGaGA- -5'
21376 3' -59 NC_004812.1 + 55683 0.72 0.437398
Target:  5'- gGCCCagCUCUCC--GGCCCgUCCUCg -3'
miRNA:   3'- -CGGGaaGAGAGGguCUGGGgAGGAGa -5'
21376 3' -59 NC_004812.1 + 7309 0.72 0.455223
Target:  5'- cGCCCgUCg--CCCGGcCCUCUCCUCg -3'
miRNA:   3'- -CGGGaAGagaGGGUCuGGGGAGGAGa -5'
21376 3' -59 NC_004812.1 + 55742 0.71 0.492
Target:  5'- cGCCCUcccccgcCUCcCCCGcGGCCCCgUCCUCg -3'
miRNA:   3'- -CGGGAa------GAGaGGGU-CUGGGG-AGGAGa -5'
21376 3' -59 NC_004812.1 + 3829 0.71 0.510896
Target:  5'- gGCCCcg--C-CCCAGGCCCCgccCCUCUg -3'
miRNA:   3'- -CGGGaagaGaGGGUCUGGGGa--GGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.