Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21376 | 3' | -59 | NC_004812.1 | + | 149170 | 1.09 | 0.001603 |
Target: 5'- cGCCCUUCUCUCCCAGACCCCUCCUCUu -3' miRNA: 3'- -CGGGAAGAGAGGGUCUGGGGAGGAGA- -5' |
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21376 | 3' | -59 | NC_004812.1 | + | 1822 | 0.69 | 0.608992 |
Target: 5'- cGCCUcgcCUCUCCUcc-CCCCUCCUCc -3' miRNA: 3'- -CGGGaa-GAGAGGGucuGGGGAGGAGa -5' |
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21376 | 3' | -59 | NC_004812.1 | + | 110094 | 0.69 | 0.629013 |
Target: 5'- gGCCCUgCUCcCCCAGAcgacCCCCgggaccaaCCUCg -3' miRNA: 3'- -CGGGAaGAGaGGGUCU----GGGGa-------GGAGa -5' |
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21376 | 3' | -59 | NC_004812.1 | + | 151457 | 0.66 | 0.81053 |
Target: 5'- cGCCCcUCUCUgcuucuggCCCGcGGCCCUcccgCCUCc -3' miRNA: 3'- -CGGGaAGAGA--------GGGU-CUGGGGa---GGAGa -5' |
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21376 | 3' | -59 | NC_004812.1 | + | 6163 | 0.72 | 0.428638 |
Target: 5'- cGCCC-UCUCUCCCc-GCCCCUgucgUCUCUc -3' miRNA: 3'- -CGGGaAGAGAGGGucUGGGGA----GGAGA- -5' |
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21376 | 3' | -59 | NC_004812.1 | + | 25003 | 0.72 | 0.437398 |
Target: 5'- uCCUUUCUCUCCCcucCCCCUCCcCUc -3' miRNA: 3'- cGGGAAGAGAGGGucuGGGGAGGaGA- -5' |
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21376 | 3' | -59 | NC_004812.1 | + | 38210 | 0.72 | 0.455223 |
Target: 5'- cGCCCgUCg--CCCGGcCCUCUCCUCg -3' miRNA: 3'- -CGGGaAGagaGGGUCuGGGGAGGAGa -5' |
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21376 | 3' | -59 | NC_004812.1 | + | 34730 | 0.71 | 0.510896 |
Target: 5'- gGCCCcg--C-CCCAGGCCCCgccCCUCUg -3' miRNA: 3'- -CGGGaagaGaGGGUCUGGGGa--GGAGA- -5' |
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21376 | 3' | -59 | NC_004812.1 | + | 72537 | 0.7 | 0.569203 |
Target: 5'- cCCgCUUCggugagCCCGGGCCCCUCCg-- -3' miRNA: 3'- cGG-GAAGaga---GGGUCUGGGGAGGaga -5' |
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21376 | 3' | -59 | NC_004812.1 | + | 34096 | 0.69 | 0.599003 |
Target: 5'- cGCCggCUUCUCUCUCucuccGCCCCUCCg-- -3' miRNA: 3'- -CGG--GAAGAGAGGGuc---UGGGGAGGaga -5' |
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21376 | 3' | -59 | NC_004812.1 | + | 90110 | 0.7 | 0.579102 |
Target: 5'- cGCCgcgCUCgCCCAGACgCCCUCCg-- -3' miRNA: 3'- -CGGgaaGAGaGGGUCUG-GGGAGGaga -5' |
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21376 | 3' | -59 | NC_004812.1 | + | 29663 | 0.7 | 0.539784 |
Target: 5'- uGCCCggccCUCgcggCCCcGGCCCCUCCcCg -3' miRNA: 3'- -CGGGaa--GAGa---GGGuCUGGGGAGGaGa -5' |
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21376 | 3' | -59 | NC_004812.1 | + | 63106 | 0.77 | 0.21908 |
Target: 5'- cUCCUUCUCUCCCGGcCgcucuccgCCCUCCUCg -3' miRNA: 3'- cGGGAAGAGAGGGUCuG--------GGGAGGAGa -5' |
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21376 | 3' | -59 | NC_004812.1 | + | 54336 | 0.7 | 0.579102 |
Target: 5'- cGCCCUaCccaUCCCuccCCCCUCCUCg -3' miRNA: 3'- -CGGGAaGag-AGGGucuGGGGAGGAGa -5' |
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21376 | 3' | -59 | NC_004812.1 | + | 16957 | 0.73 | 0.394661 |
Target: 5'- cGCCaucCUCUCCCcuGCCCCUCuCUCg -3' miRNA: 3'- -CGGgaaGAGAGGGucUGGGGAG-GAGa -5' |
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21376 | 3' | -59 | NC_004812.1 | + | 151254 | 0.71 | 0.51854 |
Target: 5'- aGCCCgagucugccgcCUCUCCCGGGCCUCcccccgCCUCc -3' miRNA: 3'- -CGGGaa---------GAGAGGGUCUGGGGa-----GGAGa -5' |
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21376 | 3' | -59 | NC_004812.1 | + | 111882 | 0.7 | 0.589038 |
Target: 5'- aGCCCcUCgugCUCCCgGGACCCCcgCCg-- -3' miRNA: 3'- -CGGGaAGa--GAGGG-UCUGGGGa-GGaga -5' |
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21376 | 3' | -59 | NC_004812.1 | + | 50042 | 0.69 | 0.608992 |
Target: 5'- cGCCCgg----CCCGGGCgCCUCCUCc -3' miRNA: 3'- -CGGGaagagaGGGUCUGgGGAGGAGa -5' |
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21376 | 3' | -59 | NC_004812.1 | + | 153288 | 0.73 | 0.411432 |
Target: 5'- gGCCCcUCgggcccCUCCCcuGGCUCCUCCUCg -3' miRNA: 3'- -CGGGaAGa-----GAGGGu-CUGGGGAGGAGa -5' |
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21376 | 3' | -59 | NC_004812.1 | + | 90520 | 0.72 | 0.455223 |
Target: 5'- uGCUCUUCUa-CCCGGACCCCaCCUa- -3' miRNA: 3'- -CGGGAAGAgaGGGUCUGGGGaGGAga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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