miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21376 5' -56.5 NC_004812.1 + 39085 0.66 0.889441
Target:  5'- -gGGUccGGGccGGGGUCCGgccGAGAGCGg -3'
miRNA:   3'- ugUCA--UCC--CCUCAGGCacuCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 40512 0.68 0.820395
Target:  5'- cGCGGgggAGGGGAGgggggCgCGggggagggGAGGGGGCGc -3'
miRNA:   3'- -UGUCa--UCCCCUCa----G-GCa-------CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 40571 0.69 0.775811
Target:  5'- cGCGGgggAGGGGAGggggCgCGggggagggGAGGGGGCGc -3'
miRNA:   3'- -UGUCa--UCCCCUCa---G-GCa-------CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 40709 0.69 0.775811
Target:  5'- cGCGGgggAGGGGAGggggCgCGggggagggGAGGGGGCGc -3'
miRNA:   3'- -UGUCa--UCCCCUCa---G-GCa-------CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 43007 0.73 0.536978
Target:  5'- gGCGGUGGGGGugcGGgggCgGUGGGGGuGCGg -3'
miRNA:   3'- -UGUCAUCCCC---UCa--GgCACUCUCuCGC- -5'
21376 5' -56.5 NC_004812.1 + 43041 0.73 0.536978
Target:  5'- gGCGGUGGGGGugcGGgggCgGUGGGGGuGCGg -3'
miRNA:   3'- -UGUCAUCCCC---UCa--GgCACUCUCuCGC- -5'
21376 5' -56.5 NC_004812.1 + 45102 0.7 0.708323
Target:  5'- gGCGGgcGGGGGG--CGUGAGucGGGGCGa -3'
miRNA:   3'- -UGUCauCCCCUCagGCACUC--UCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 45449 0.69 0.757029
Target:  5'- gGCAG-AGGGugguGAGgugCCG-GAGGGAGCGc -3'
miRNA:   3'- -UGUCaUCCC----CUCa--GGCaCUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 46654 0.69 0.775811
Target:  5'- ----gGGGuGGGGUCCGUGgccGGGGGGCa -3'
miRNA:   3'- ugucaUCC-CCUCAGGCAC---UCUCUCGc -5'
21376 5' -56.5 NC_004812.1 + 47840 0.72 0.566812
Target:  5'- gGCGGUGGGGGAGg----GGGAGAGgGg -3'
miRNA:   3'- -UGUCAUCCCCUCaggcaCUCUCUCgC- -5'
21376 5' -56.5 NC_004812.1 + 50198 0.67 0.868254
Target:  5'- cGCAG-AGGaacgccGGGG-CCGUGAGGccGAGCGg -3'
miRNA:   3'- -UGUCaUCC------CCUCaGGCACUCU--CUCGC- -5'
21376 5' -56.5 NC_004812.1 + 66085 0.68 0.785017
Target:  5'- cGCcGUAGGuGGGGUCCGgguAGaAGAGCa -3'
miRNA:   3'- -UGuCAUCC-CCUCAGGCac-UC-UCUCGc -5'
21376 5' -56.5 NC_004812.1 + 69954 0.7 0.668154
Target:  5'- gGCcGaGGGGGGGUCUGUGGccGGGGGCu -3'
miRNA:   3'- -UGuCaUCCCCUCAGGCACU--CUCUCGc -5'
21376 5' -56.5 NC_004812.1 + 70272 0.66 0.896062
Target:  5'- cGCGGUGGGGGGcaacucguuGUCCGgggcguugucGAGAucGCGg -3'
miRNA:   3'- -UGUCAUCCCCU---------CAGGCa---------CUCUcuCGC- -5'
21376 5' -56.5 NC_004812.1 + 70880 0.66 0.902455
Target:  5'- uGCGcgGGGGGGG-CgGgGAGGGGGCGg -3'
miRNA:   3'- -UGUcaUCCCCUCaGgCaCUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 71864 0.68 0.784102
Target:  5'- -gGGaUGGGGGucggccaGGUUgGUGAGAGAGCc -3'
miRNA:   3'- ugUC-AUCCCC-------UCAGgCACUCUCUCGc -5'
21376 5' -56.5 NC_004812.1 + 72124 0.66 0.908617
Target:  5'- cCGGUGGaGGcGGGUCgG-GAGGGuGCGg -3'
miRNA:   3'- uGUCAUC-CC-CUCAGgCaCUCUCuCGC- -5'
21376 5' -56.5 NC_004812.1 + 77937 0.67 0.860766
Target:  5'- aGCGGUucGGGGuGGGUCgggGUGGcGGGGGCGa -3'
miRNA:   3'- -UGUCA--UCCC-CUCAGg--CACU-CUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 80618 0.76 0.390231
Target:  5'- uCGGUGGGGG-GUCCGcggugGAGAgGGGCGg -3'
miRNA:   3'- uGUCAUCCCCuCAGGCa----CUCU-CUCGC- -5'
21376 5' -56.5 NC_004812.1 + 80690 0.67 0.860766
Target:  5'- cCAGgucccUGGGGGGGUCCGgcccgGGGaAGGGaCGa -3'
miRNA:   3'- uGUC-----AUCCCCUCAGGCa----CUC-UCUC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.