Results 21 - 40 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21376 | 5' | -56.5 | NC_004812.1 | + | 23078 | 0.66 | 0.88673 |
Target: 5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3' miRNA: 3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 23130 | 0.66 | 0.88673 |
Target: 5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3' miRNA: 3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 23182 | 0.66 | 0.88673 |
Target: 5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3' miRNA: 3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 23234 | 0.66 | 0.88673 |
Target: 5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3' miRNA: 3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 23286 | 0.66 | 0.88673 |
Target: 5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3' miRNA: 3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 27793 | 0.67 | 0.845183 |
Target: 5'- cCGGgggagAGGGcGGGgCCGggGGGGGAGCGg -3' miRNA: 3'- uGUCa----UCCC-CUCaGGCa-CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 29230 | 0.69 | 0.775811 |
Target: 5'- gGCGGgcGGGG-GUCgCG-GAG-GAGCGg -3' miRNA: 3'- -UGUCauCCCCuCAG-GCaCUCuCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 29385 | 0.68 | 0.811783 |
Target: 5'- cGCGGggccGGGcGGAGUCUGgcgGAGucGGGCGg -3' miRNA: 3'- -UGUCa---UCC-CCUCAGGCa--CUCu-CUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 29516 | 0.68 | 0.794086 |
Target: 5'- -gAGgcGGGGAG-CCGUGcGGGGGgGa -3' miRNA: 3'- ugUCauCCCCUCaGGCACuCUCUCgC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 29554 | 0.67 | 0.828837 |
Target: 5'- cGCGcGUAGGGGGGaa-GgggGGGGGGGCGg -3' miRNA: 3'- -UGU-CAUCCCCUCaggCa--CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 30688 | 0.67 | 0.828837 |
Target: 5'- -gAGgGGGGGAGggggCCGcugGGGAGAGgGa -3' miRNA: 3'- ugUCaUCCCCUCa---GGCa--CUCUCUCgC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 35553 | 0.66 | 0.882597 |
Target: 5'- cGCGGgcGGGGc--CCGgauagaggGAGGGGGCGg -3' miRNA: 3'- -UGUCauCCCCucaGGCa-------CUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 35679 | 0.69 | 0.72806 |
Target: 5'- cGCGGUGGGGGAGggggCgG-GGcGAGGGCu -3' miRNA: 3'- -UGUCAUCCCCUCa---GgCaCU-CUCUCGc -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 36006 | 0.7 | 0.688331 |
Target: 5'- -aGGcGGGGGAGUCUGggguccGGGGGGCGg -3' miRNA: 3'- ugUCaUCCCCUCAGGCac----UCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 36238 | 0.69 | 0.775811 |
Target: 5'- cACGGaggcgGGGGGAGgcCCGgGAGAG-GCGg -3' miRNA: 3'- -UGUCa----UCCCCUCa-GGCaCUCUCuCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 36610 | 0.66 | 0.896062 |
Target: 5'- cACGGgggGGcGGGGGUCUGccgcggGAGgAGGGCGc -3' miRNA: 3'- -UGUCa--UC-CCCUCAGGCa-----CUC-UCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 36857 | 0.74 | 0.469783 |
Target: 5'- gGCAGggcccGGGGAGgCCGcGGGGGGGCGa -3' miRNA: 3'- -UGUCau---CCCCUCaGGCaCUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 37553 | 0.74 | 0.479132 |
Target: 5'- -gGGUGGGGGAGaUgG-GGGAGAGCGg -3' miRNA: 3'- ugUCAUCCCCUCaGgCaCUCUCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 38392 | 0.66 | 0.908617 |
Target: 5'- -gGGaUGGGGGGGggaCgGUGGGccGGAGCGa -3' miRNA: 3'- ugUC-AUCCCCUCa--GgCACUC--UCUCGC- -5' |
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21376 | 5' | -56.5 | NC_004812.1 | + | 38843 | 0.69 | 0.757029 |
Target: 5'- cGCGGccGGGGGGcgcGUCCG-GGGGGGGCc -3' miRNA: 3'- -UGUCa-UCCCCU---CAGGCaCUCUCUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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