miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21376 5' -56.5 NC_004812.1 + 33 0.68 0.811783
Target:  5'- uCGGggGGcGGGGGUUCGUucGGGGGGGCGc -3'
miRNA:   3'- uGUCa-UC-CCCUCAGGCA--CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 4778 0.69 0.72806
Target:  5'- cGCGGUGGGGGAGggggCgG-GGcGAGGGCu -3'
miRNA:   3'- -UGUCAUCCCCUCa---GgCaCU-CUCUCGc -5'
21376 5' -56.5 NC_004812.1 + 5105 0.7 0.688331
Target:  5'- -aGGcGGGGGAGUCUGggguccGGGGGGCGg -3'
miRNA:   3'- ugUCaUCCCCUCAGGCac----UCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 5337 0.69 0.775811
Target:  5'- cACGGaggcgGGGGGAGgcCCGgGAGAG-GCGg -3'
miRNA:   3'- -UGUCa----UCCCCUCa-GGCaCUCUCuCGC- -5'
21376 5' -56.5 NC_004812.1 + 5709 0.66 0.896062
Target:  5'- cACGGgggGGcGGGGGUCUGccgcggGAGgAGGGCGc -3'
miRNA:   3'- -UGUCa--UC-CCCUCAGGCa-----CUC-UCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 5956 0.74 0.469783
Target:  5'- gGCAGggcccGGGGAGgCCGcGGGGGGGCGa -3'
miRNA:   3'- -UGUCau---CCCCUCaGGCaCUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 6652 0.74 0.479132
Target:  5'- -gGGUGGGGGAGaUgG-GGGAGAGCGg -3'
miRNA:   3'- ugUCAUCCCCUCaGgCaCUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 7491 0.66 0.908617
Target:  5'- -gGGaUGGGGGGGggaCgGUGGGccGGAGCGa -3'
miRNA:   3'- ugUC-AUCCCCUCa--GgCACUC--UCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 7942 0.69 0.757029
Target:  5'- cGCGGccgGGGGGcgcGUCCG-GGGGGGGCc -3'
miRNA:   3'- -UGUCa--UCCCCu--CAGGCaCUCUCUCGc -5'
21376 5' -56.5 NC_004812.1 + 8184 0.66 0.889441
Target:  5'- -gGGUccGGGccGGGGUCCGgccGAGAGCGg -3'
miRNA:   3'- ugUCA--UCC--CCUCAGGCacuCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 10505 0.71 0.617351
Target:  5'- -gGGUAGGGGAGagaagCCGgagGcGGGGGCGg -3'
miRNA:   3'- ugUCAUCCCCUCa----GGCa--CuCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 11058 0.66 0.882597
Target:  5'- ---uUGGGGGccgGGUCCGUGccGGGGAGgCGa -3'
miRNA:   3'- ugucAUCCCC---UCAGGCAC--UCUCUC-GC- -5'
21376 5' -56.5 NC_004812.1 + 16126 0.7 0.698355
Target:  5'- -uGGUGGcGGGGGcccCCGUGGuGGGGGCGg -3'
miRNA:   3'- ugUCAUC-CCCUCa--GGCACU-CUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 16211 0.8 0.214177
Target:  5'- gACGGUGGGGGugguGUCCGUGGcGAGcGCGg -3'
miRNA:   3'- -UGUCAUCCCCu---CAGGCACU-CUCuCGC- -5'
21376 5' -56.5 NC_004812.1 + 16559 0.66 0.889441
Target:  5'- uCGGggAGGaGGAG-CUGUGGGAG-GCGa -3'
miRNA:   3'- uGUCa-UCC-CCUCaGGCACUCUCuCGC- -5'
21376 5' -56.5 NC_004812.1 + 16714 0.73 0.498098
Target:  5'- gGguGUGGGGGGGUUCcguaggggaugGUGAGGGGGCc -3'
miRNA:   3'- -UguCAUCCCCUCAGG-----------CACUCUCUCGc -5'
21376 5' -56.5 NC_004812.1 + 16801 0.69 0.72806
Target:  5'- -gGGgcgGGGGGAGUCUG-GAGGacGGGCGc -3'
miRNA:   3'- ugUCa--UCCCCUCAGGCaCUCU--CUCGC- -5'
21376 5' -56.5 NC_004812.1 + 18435 0.66 0.889441
Target:  5'- cGCGGcGGGGGccgcGUCCGguggcgcggcGGGGGGGCGc -3'
miRNA:   3'- -UGUCaUCCCCu---CAGGCa---------CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 22974 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 23026 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.